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LSH6 protein (Arabidopsis thaliana) - STRING interaction network
"LSH6" - Uncharacterized protein in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LSH6Uncharacterized protein; Probable transcription regulator that acts as a developmental regulator by promoting cell growth in response to light (196 aa)    
Predicted Functional Partners:
AT1G15140
FAD/NAD(P)-binding oxidoreductase (295 aa)
           
  0.869
MYB82
Myb domain protein 82; Transcription activation factor positively regulating trichomes development (PubMed-24803498). Has a function nearly equivalent to that of GL1 and can complement gl1 mutants (PubMed-24803498) (201 aa)
           
  0.670
BHLH92
Transcription factor bHLH92 (247 aa)
           
  0.670
RWP1
REDUCED LEVELS OF WALL-BOUND PHENOLICS 1; Involved in the synthesis of aromatics of the suberin polymer. Specifically affects the accumulation of the ferulate constituent of suberin in roots and seeds, but has no effect on the content of p-coumarate or sinapate (457 aa)
           
  0.635
MYB95
Myb domain protein 95 (271 aa)
           
  0.560
AIR1
Auxin-Induced in Root cultures 1 (111 aa)
           
  0.556
MYB41
Myb domain protein 41 (282 aa)
           
  0.448
HSFB2A
Heat shock transcription factor B2A; Transcriptional regulator that specifically binds DNA sequence 5’-AGAAnnTTCT-3’ known as heat shock promoter elements (HSE) (299 aa)
           
  0.442
XPO1A
Exportin 1A; Receptor for the leucine-rich nuclear export signal (NES). Binds cooperatively to the NES on its target protein and to the small GTPase Ran in its active GTP-bound form (PubMed-10652141, PubMed-16766674). Required for the maternal-to- embryonic transition and during gametophyte development (PubMed-18791220). Involved in heat-induced oxidative stress basal resistance (PubMed-20345641) (1075 aa)
           
  0.424
AT1G52560
HSP20-like chaperone (232 aa)
           
  0.424
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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