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AT1G07170.1 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G07170.1" - PHF5-like protein in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G07170.1PHF5-like protein (110 aa)    
Predicted Functional Partners:
AT4G21110
G10 family protein (145 aa)
     
      0.965
AT5G64270
Putative splicing factor (1269 aa)
       
 
  0.963
CDC5
Cell division cycle 5; Component of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. Possesses a sequence specific DNA sequence ’CTCAGCG’ binding activity. Involved in mRNA splicing and cell cycle control. May also play a role in the response to DNA damage (844 aa)
       
      0.962
AT4G14342
Splicing factor 3B subunit 5 (87 aa)
     
 
  0.960
AT3G23325
Splicing factor 3B subunit 5/RDS3 complex subunit 10 (87 aa)
     
 
  0.960
emb2444
Embryo defective 2444 (363 aa)
     
 
  0.959
AT4G10110
RNA recognition motif-containing protein (173 aa)
     
 
  0.958
AT4G21660
Splicing factor 3B subunit 2 (598 aa)
       
 
  0.953
AT1G11520
Pliceosome associated protein-related (196 aa)
       
 
  0.953
SAP130b
Putative splicing factor (1214 aa)
       
 
  0.942
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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