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STRINGSTRING
AT1G07280 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G07280" - Tetratricopeptide repeat in Arabidopsis thaliana
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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AT1G07280Tetratricopeptide repeat (TPR)-like superfamily protein; Its function is described as binding; Involved in biological_process unknown; Located in chloroplast; Expressed in 21 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- Tetratricopeptide-like helical (InterPro-IPR011990), Tetratricopeptide repeat-containing (InterPro-IPR013026); BEST Arabidopsis thaliana protein match is- Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR-AT2G29670.1); Has 604 Blast hits to 369 proteins in 73 species- Archae - 4; Bacteria - 161; Metazoa - 2; F [...] (552 aa)    
Predicted Functional Partners:
AT4G35335
Nucleotide-sugar transporter family protein; Sugar transporter involved in the transport of CMP- sialic acid from the cytoplasm into the Golgi (By similarity). Essential protein (352 aa)
           
  0.626
EXO70G1
A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree (687 aa)
           
  0.582
AT4G36080
Phosphotransferases, alcohol group as acceptor;binding;inositol or phosphatidylinositol kinases; Its function is described as inositol or phosphatidylinositol kinase activity, binding, phosphotransferase activity, alcohol group as acceptor; Contains the following InterPro domains- Phosphatidylinositol 3-/4-kinase, catalytic (InterPro-IPR000403), PIK-related kinase, FAT (InterPro-IPR003151), Armadillo-type fold (InterPro-IPR016024), PIK-related kinase (InterPro-IPR014009), PIK-related kinase, FATC (InterPro-IPR003152), Protein kinase-like domain (InterPro-IPR011009); BEST Arabidopsis th [...] (3834 aa)
           
  0.522
AT2G17930
Phosphatidylinositol 3- and 4-kinase family protein with FAT domain; Its function is described as inositol or phosphatidylinositol kinase activity, binding, phosphotransferase activity, alcohol group as acceptor; Expressed in 24 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- Phosphatidylinositol 3-/4-kinase, catalytic (InterPro-IPR000403), PIK-related kinase, FAT (InterPro-IPR003151), PIK-related kinase (InterPro-IPR014009), Armadillo-type fold (InterPro-IPR016024), PIK-related kinase, FATC (InterPro-IPR003152), Protein kinase-like domain [...] (3858 aa)
           
  0.522
TOR
Serine/threonine-protein kinase TOR; Essential cell growth regulator that controls development from early embryo to seed production. Controls plant growth in environmental stress conditions. Acts through the phosphorylation of downstream effectors that are recruited by the binding partner RAPTOR. Acts by activating transcription, protein synthesis and ribosome biogenesis, and inhibiting mRNA degradation and autophagy. Can phosphorylate TAP46, a regulatory subunit of protein phosphatase 2A that modulates cell growth and survival. Involved in modulating the transition from heterotrophic [...] (2481 aa)
           
  0.483
ACD32.1
Peroxisomal small heat shock protein Acd31.2; ACD32.1 encodes an alpha-crystallin domain containing protein with homology to small heat shock proteins (285 aa)
     
        0.463
emb2410
Embryo defective 2410 (emb2410); Its function is described as molecular_function unknown; Involved in embryo development ending in seed dormancy; Expressed in 23 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- Protein of unknown function DUF490 (InterPro-IPR007452); Has 35333 Blast hits to 34131 proteins in 2444 species- Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source- NCBI BLink) (2166 aa)
           
  0.442
CYCP4;1
Cyclin-U4-1; Cyclin p4;1 (CYCP4;1); Contains the following InterPro domains- Negative regulatory factor PREG (InterPro-IPR012389), Cyclin-like (InterPro-IPR011028), Cyclin, N-terminal (InterPro-IPR006671), Cyclin (InterPro-IPR006670); BEST Arabidopsis thaliana protein match is- CYCLIN P4;2 (TAIR-AT5G61650.1); Has 1474 Blast hits to 1416 proteins in 218 species- Archae - 0; Bacteria - 18; Metazoa - 247; Fungi - 710; Plants - 236; Viruses - 0; Other Eukaryotes - 263 (source- NCBI BLink) (202 aa)
           
  0.441
AT2G03310
Unknown protein; Has 17 Blast hits to 17 proteins in 6 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 0 (source- NCBI BLink) (176 aa)
     
        0.418
PIFI
Post-illumination chlorophyll fluorescence increase; Encodes a chloroplast-targeted protein localized in the stroma that is a novel component essential for NDH-mediated non-photochemical reduction of the plastoquinone pool in chlororespiratory electron transport (268 aa)
     
        0.418
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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