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AT1G07300 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G07300" - Josephin protein-related in Arabidopsis thaliana
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Cooccurence
Coexpression
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Textmining
[Homology]
Score
AT1G07300Josephin protein-related; BEST Arabidopsis thaliana protein match is- JOSEPHIN-like protein (TAIR-AT2G29640.1); Has 49 Blast hits to 49 proteins in 11 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 49; Viruses - 0; Other Eukaryotes - 0 (source- NCBI BLink) (128 aa)    
Predicted Functional Partners:
AT3G54130
Josephin family protein; Interacts with key regulators of transcription and represses transcription. Acts as a histone-binding protein that regulates transcription. Acts as a deubiquitinating enzyme (By similarity) (280 aa)
           
  0.959
UCH3
Ubiquitin C-terminal hydrolase 3 (UCH3); Its function is described as ubiquitin thiolesterase activity; Involved in ubiquitin-dependent protein catabolic process; Located in intracellular; Expressed in 24 plant structures; Expressed during 15 growth stages; Contains the following InterPro domains- Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1 (InterPro-IPR001578); BEST Arabidopsis thaliana protein match is- Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1 (TAIR-AT1G65650.1); Has 1294 Blast hits to 1288 proteins in 232 species- Archae - 0; Bacteria - 0; Metazoa - 624; Fun [...] (234 aa)
           
  0.815
UBP14
Ubiquitin carboxyl-terminal hydrolase 14; Encodes a ubiquitin-specific protease. Identical to TTN6. Loss of function mutations are embryo lethals, having development arrested at the preglobular/globular stage. Also involved in root responses to phosphate deficiency (797 aa)
           
  0.732
UBP27
Ubiquitin carboxyl-terminal hydrolase 27; Recognizes and hydrolyzes the peptide bond at the C- terminal Gly of ubiquitin. Involved in the processing of poly- ubiquitin precursors as well as that of ubiquitinated proteins (By similarity); Belongs to the peptidase C19 family (505 aa)
       
 
  0.647
UBP3
Ubiquitin carboxyl-terminal hydrolase 3; Recognizes and hydrolyzes the peptide bond at the C- terminal Gly of ubiquitin. Involved in the processing of poly- ubiquitin precursors as well as that of ubiquitinated proteins. Required for the correct development of pollen; Belongs to the peptidase C19 family (371 aa)
           
  0.640
UCH1
Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1; Ubiquitin-protein hydrolase involved in the release of ubiquitin attached via both peptide and isopeptide linkages. Able to cleave ’Lys-48’-linked polyubiquitin chains. Involved in the direct or indirect regulation of AUX/IAA proteins stability (Probable). Acts as a linker between the TREX-2 complex and 26S proteasome (334 aa)
           
  0.638
UCH2
Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1; Ubiquitin-protein hydrolase involved in the release of ubiquitin attached via both peptide and isopeptide linkages. Able to cleave ’Lys-48’-linked polyubiquitin chains. Involved in the direct or indirect regulation of AUX/IAA proteins stability. Acts as a linker between the TREX-2 complex and 26S proteasome; Belongs to the peptidase C12 family (330 aa)
           
  0.636
UBP2
Ubiquitin carboxyl-terminal hydrolase 2; Recognizes and hydrolyzes the peptide bond at the C- terminal Gly of ubiquitin. Involved in the processing of poly- ubiquitin precursors as well as that of ubiquitinated proteins. Is involved in resistance to the arginine analog canavanine (CAN) (961 aa)
       
 
  0.603
AT1G28120
Ubiquitin thioesterase otubain-like; Possible hydrolase that can remove conjugated ubiquitin from proteins in vitro and may therefore play an important regulatory role at the level of protein turnover by preventing degradation (306 aa)
           
  0.582
BRCC36B
Mov34/MPN/PAD-1 family protein; Its function is described as molecular_function unknown; Involved in ubiquitin-dependent protein catabolic process; Located in endomembrane system; Contains the following InterPro domains- Mov34/MPN/PAD-1 (InterPro-IPR000555); BEST Arabidopsis thaliana protein match is- Mov34/MPN/PAD-1 family protein (TAIR-AT1G80210.1); Has 1006 Blast hits to 928 proteins in 230 species- Archae - 0; Bacteria - 7; Metazoa - 464; Fungi - 225; Plants - 185; Viruses - 0; Other Eukaryotes - 125 (source- NCBI BLink) (405 aa)
       
 
  0.550
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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