• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
AT1G07520 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G07520" - GRAS family transcription factor in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G07520GRAS family transcription factor; Probable transcription factor involved in plant development; Belongs to the GRAS family (695 aa)    
Predicted Functional Partners:
SCL30
Serine/arginine-rich SC35-like splicing factor SCL30; Involved in intron recognition and spliceosome assembly (Probable). Probably active at the 5’ splice sites (262 aa)
           
  0.644
SFC
ADP-ribosylation factor GTPase-activating protein AGD3; Belongs to 15-member small GTPase gene family, ARF-GAP domain proteins (AGD); corresponds to AGD3, and is one of four proteins belonging to class 1, together with AGD1, AGD2 and AGD4. The protein contains four domains- BAR domain, PH domain, an ARF-GAP domain, and two Ankyrin repeats. In sfc mutants, the secondary and tertiary veins of cotyledons, leaves, sepals and petals are largely replaced by small segments of discontinuous veins. sfc mutants have exaggerated responses to auxin (827 aa)
           
  0.636
ARC5
P-loop containing nucleoside triphosphate hydrolases superfamily protein; Encodes a novel chloroplast division protein. Mutants of exhibit defects in chloroplast constriction, have enlarged, dumbbell-shaped chloroplasts. The ARC5 gene product shares similarity with the dynamin family of GTPases, which mediate endocytosis, mitochondrial division, and other organellar fission and fusion events in eukaryotes. Phylogenetic analysis showed that ARC5 is related to a group of dynamin-like proteins unique to plants. A GFP-ARC5 fusion protein localizes to a ring at the chloroplast division site [...] (777 aa)
           
  0.636
SCL28
Serine/arginine-rich SC35-like splicing factor SCL28; Involved in intron recognition and spliceosome assembly (Probable). Probably active at the 5’ splice sites; Belongs to the splicing factor SR family. SCL subfamily (236 aa)
           
  0.626
BRC1
TCP family transcription factor; Transcription factor that prevents axillary bud outgrowth and delays early axillary bud development. Indirectly required for the auxin-induced control of apical dominance (433 aa)
           
  0.574
HB25
Zinc-finger homeodomain protein 1; Encodes ZFHD2, a member of the zinc finger homeodomain transcriptional factor family (279 aa)
           
  0.569
MEE68
Zinc-finger homeodomain protein 2; Essential protein. Putative transcription factor (220 aa)
           
  0.569
SCL33
Serine/arginine-rich SC35-like splicing factor SCL33; Involved in intron recognition and spliceosome assembly. Binds to multiple 5’-GAAG-3’ repeats found in its third intron, suggesting autoregulation of alternative splicing. May be necessary for accurate splicing of the 3’ region of introns; Belongs to the splicing factor SR family. SCL subfamily (300 aa)
           
  0.524
AGD1
ADP-ribosylation factor GTPase-activating protein AGD1; A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes. AGD1 belongs to the class 1, together with AGD2, AGD3 and AGD4. Not expressed in hypocotyls and cotyledons (828 aa)
           
  0.416
T7P1.1
ADP-ribosylation factor GTPase-activating protein AGD2; A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes. AGD2 belongs to the class 1, together with AGD1, AGD3, and AGD4 (776 aa)
           
  0.416
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
Server load: low (12%) [HD]