STRINGSTRING
AT1G07830 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G07830" - Ribosomal protein L29 family protein in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G07830Ribosomal protein L29 family protein (144 aa)    
Predicted Functional Partners:
AT5G09770
Ribosomal protein L17 family protein (160 aa)
     
      0.997
AT5G64650
Large subunit ribosomal protein L17 (160 aa)
     
      0.997
AT3G54210
50S ribosomal protein L17; This protein binds directly to 23S ribosomal RNA (211 aa)
     
      0.996
DECOY
DECOY (233 aa)
     
 
  0.993
AT2G20060
Ribosomal protein L4/L1 family (300 aa)
     
 
  0.990
AT5G64670
Ribosomal protein L18e/L15 (281 aa)
     
      0.986
RPL15
Ribosomal protein L15 (277 aa)
     
      0.984
RPL4
Ribosomal protein L4; This protein binds directly and specifically to 23S rRNA (By similarity). May play a role in plastid transcriptional regulation (282 aa)
     
 
  0.984
AT3G01790
Large subunit ribosomal protein L13 (205 aa)
     
      0.981
RPL3P
50S ribosomal protein L3-2; One of the primary rRNA binding proteins, it binds directly near the 3’-end of the 23S rRNA, where it nucleates assembly of the 50S subunit (324 aa)
     
      0.978
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
Server load: low (8%) [HD]