STRINGSTRING
LBD1 protein (Arabidopsis thaliana) - STRING interaction network
"LBD1" - LOB domain-containing protein 1 in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LBD1LOB domain-containing protein 1 (190 aa)    
Predicted Functional Partners:
TBL4
TRICHOME BIREFRINGENCE-LIKE 4; May be involved in the specific O-acetylation of cell wall polymers (457 aa)
           
  0.603
LBD40
LOB domain-containing protein 40 (233 aa)
           
  0.493
LBD42
LOB domain-containing protein 42 (233 aa)
           
  0.491
BRM
BRAHMA; ATPase subunit of a multiprotein complex equivalent of the SWI/SNF complex that acts by remodeling the chromatin by catalyzing an ATP-dependent alteration in the structure of nucleosomal DNA. Represses embryonic genes in leaves and controls shoot development and flowering. Activates flower homeotic genes (2193 aa)
       
 
  0.464
SWI3C
SWI/SNF complex subunit SWI3C; Component of a multiprotein complex equivalent of the SWI/SNF complex, an ATP-dependent chromatin-remodeling complex, which is required for the positive and negative regulation of gene expression of a large number of genes. It changes chromatin structure by altering DNA-histone contacts within a nucleosome, leading eventually to a change in nucleosome position, thus facilitating or repressing binding of gene-specific transcription factors (807 aa)
       
      0.449
LBD41
LOB domain-containing protein 41 (263 aa)
           
  0.445
SFP2
Sugar transporter ERD6-like 18; Sugar transporter (478 aa)
           
  0.445
MYB78
Myb domain protein 78 (321 aa)
           
  0.443
LTI65
CAP160 protein (619 aa)
     
        0.437
At5g66400
Dehydrin Rab18 (186 aa)
     
        0.436
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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