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AT1G08040 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G08040" - Protein of unknown function in Arabidopsis thaliana
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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AT1G08040Protein of unknown function (DUF707); Its function is described as molecular_function unknown; Involved in biological_process unknown; Expressed in 25 plant structures; Expressed during 15 growth stages; Contains the following InterPro domains- Protein of unknown function DUF707 (InterPro-IPR007877); BEST Arabidopsis thaliana protein match is- Protein of unknown function (DUF707) (TAIR-AT2G28310.3); Has 328 Blast hits to 327 proteins in 28 species- Archae - 0; Bacteria - 17; Metazoa - 0; Fungi - 0; Plants - 305; Viruses - 0; Other Eukaryotes - 6 (source- NCBI BLink) (382 aa)    
Predicted Functional Partners:
EMB2765
P-loop containing nucleoside triphosphate hydrolases superfamily protein; EMBRYO DEFECTIVE 2765 (EMB2765); Located in plasma membrane, chloroplast; Expressed in 24 plant structures; Expressed during 13 growth stages; BEST Arabidopsis thaliana protein match is- RNA helicase, putative (TAIR-AT5G47010.1); Has 4121 Blast hits to 3614 proteins in 689 species- Archae - 125; Bacteria - 655; Metazoa - 959; Fungi - 1056; Plants - 630; Viruses - 0; Other Eukaryotes - 696 (source- NCBI BLink) (1509 aa)
           
  0.839
MEE29
Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH6; May be involved in pre-mRNA splicing; Belongs to the DEAD box helicase family. DEAH subfamily. PRP2 sub-subfamily (1044 aa)
           
  0.739
EMB140
EMBRYO DEFECTIVE 140; A locus involved in embryogenesis. Mutations in this locus result in embryo lethality (817 aa)
           
  0.570
AT3G16650
Transducin/WD40 repeat-like superfamily protein; Pleiotropic regulator (479 aa)
           
  0.567
PRL1
Protein pleiotropic regulatory locus 1; Pleiotropic regulator of glucose, stress and hormone responses. Also regulates cytochrome P450 CYP90A1/CPD. Coordinates the expression of hormone- and stress-related genes and genes related to cell wall modification and growth, leading to altered sugar-dependent growth and developmental responses. Component of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. By suppressing the expression of several (1)O(2)- responsive genes, PRL1 seems to play a major rol [...] (486 aa)
           
  0.550
PPH
Pheophytinase, chloroplastic; Alpha/beta hydrolase dephytylating specifically the Mg- free chlorophyll pigment (pheophytin), yielding pheophorbide. No activity on chlorophyll. Belongs to the chlorophyll catabolic enzymes (CCEs) (484 aa)
           
  0.525
EMB14
Pre-mRNA-processing-splicing factor 8A; Functions as a scaffold that mediates the ordered assembly of spliceosomal proteins and snRNAs. Required for the assembly of the U4/U6-U5 tri-snRNP complex (By similarity). Required for embryo development (Ref.3). Required for splicing efficiency of COOLAIR introns and usage of the proximal poly(A) site. COOLAIR is a set of long non-coding antisense transcripts produced at the FLOWERING LOCUS C (FLC). COOLAIR initiates just downstream of the major sense transcript poly(A) site and terminates either early or extends into the FLC promoter region. S [...] (2359 aa)
           
  0.461
emb1220
pre-mRNA processing ribonucleoprotein binding region-containing protein; Involved in pre-mRNA splicing. Required for the assembly of the U4/U5/U6 tri-snRNP complex, one of the building blocks of the spliceosome (By similarity). Functions in association with STA1 and ZOP1 in spliceosome dynamics and pre-mRNA splicing. Required for transcriptional regulation and pre-mRNA splicing of cold-responsive genes, such as LTI78/RD29A, KIN2/COR6.6 or COR15A, especially under cold stress. May play a role in stress response. Involved in transcriptional gene silencing of endogenous transposable eleme [...] (485 aa)
           
  0.459
AT4G35510
Uncharacterized protein AT4g35510; Unknown protein; BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT2G17540.3); Has 182 Blast hits to 179 proteins in 73 species- Archae - 0; Bacteria - 87; Metazoa - 17; Fungi - 9; Plants - 50; Viruses - 0; Other Eukaryotes - 19 (source- NCBI BLink) (333 aa)
           
  0.457
AT2G17540
Uncharacterized protein At2g17540; Unknown protein; Its function is described as molecular_function unknown; Involved in biological_process unknown; Located in chloroplast; Expressed in 21 plant structures; Expressed during 13 growth stages; BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT4G35510.1); Has 35333 Blast hits to 34131 proteins in 2444 species- Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source- NCBI BLink) (275 aa)
           
  0.457
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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