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AT1G08400 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G08400" - RINT-1 / TIP-1 family in Arabidopsis thaliana
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G08400RINT-1 / TIP-1 family; May function in the anterograde transport of protein from the endoplasmic reticulum (ER) to the Golgi complex and in the retrograde transport from the Golgi complex to the ER (804 aa)    
Predicted Functional Partners:
SYP81
Syntaxin-81; Vesicle trafficking protein that functions in the secretory pathway (310 aa)
     
 
  0.985
SEC22
SECRETION 22; V-SNARE involved in vesicle trafficking from the ER to the Golgi complex (218 aa)
     
 
  0.959
ATZW10
Centromere/kinetochore protein ZW10; May be required for accurate chromosome segregation. Required for proper maturation of seed storage proteins. Forms a complex with MAG2, MIP2 and MIP3 on the endoplasmic reticulum that may be responsible for efficient transport of seed storage proteins (742 aa)
     
 
  0.952
AT5G52270
SNARE-like superfamily protein (214 aa)
     
 
  0.911
ATYKT62
VAMP-like protein YKT62; May be involved in the secretory pathway (199 aa)
     
 
  0.897
YKT61
VAMP-like protein YKT61 (221 aa)
     
 
  0.897
RAD50
DNA repair protein RAD50; Implicated in double-strand breaks (DSBs) repair by non- homologous end joining (NHEJ). Involved in telomere maintenance. Involved in telomerase action on chromosome ends. Required during meiosis for both male and female gametophytic development, for pairing and synapsis of homologous chromosomes during the early stages of meiotic recombination, especially during the pachytene stage of the first division (1316 aa)
     
 
  0.856
SYP72
Syntaxin-72; Vesicle trafficking protein that functions in the secretory pathway (267 aa)
           
  0.800
AT4G01400
Uncharacterized protein; Required for normal Golgi function (1110 aa)
     
 
  0.758
VAMP723
Member of VAMP72 Gene Family; Involved in the targeting and/or fusion of transport vesicles to their target membrane (217 aa)
     
 
  0.746
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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