STRINGSTRING
AT1G08750 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G08750" - Peptidase C13 family in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G08750Peptidase C13 family (388 aa)    
Predicted Functional Partners:
AT3G07180
GPI transamidase component PIG-S-related (599 aa)
     
  0.996
AT5G19130
Glycosylphosphatidylinositol transamidase (699 aa)
     
  0.996
AT3G07140
GPI transamidase component Gpi16 subunit-like protein (644 aa)
     
  0.995
AT1G63110
GPI transamidase subunit PIG-U (469 aa)
     
  0.990
AT1G12730
GPI transamidase subunit PIG-U (474 aa)
     
  0.990
AT5G17250
Alkaline-phosphatase-like protein (925 aa)
     
  0.954
AT1G63105
Uncharacterized protein (122 aa)
     
 
  0.953
AT1G16040
Uncharacterized protein (226 aa)
     
 
  0.937
AT2G22530
Ethanolaminephosphotransferase (958 aa)
     
 
  0.746
AT3G01380
Transferases;sulfuric ester hydrolases;catalytics;transferases (993 aa)
     
 
  0.562
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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