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STRINGSTRING
AT1G08845 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G08845" - Ribosomal L18p/L5e family protein in Arabidopsis thaliana
Nodes:
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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AT1G08845Ribosomal L18p/L5e family protein; Its function is described as structural constituent of ribosome; Involved in translation; Located in endomembrane system, ribosome, intracellular; Contains the following InterPro domains- Ribosomal protein L18/L5 (InterPro-IPR005484); BEST Arabidopsis thaliana protein match is- Ribosomal L18p/L5e family protein (TAIR-AT3G20230.1); Has 251 Blast hits to 251 proteins in 55 species- Archae - 0; Bacteria - 86; Metazoa - 0; Fungi - 0; Plants - 148; Viruses - 0; Other Eukaryotes - 17 (source- NCBI BLink) (234 aa)    
Predicted Functional Partners:
AT2G43310
Uncharacterized protein At2g43310/F14B2.31; Ribosomal L18p/L5e family protein; Has 17 Blast hits to 17 proteins in 7 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 0 (source- NCBI BLink) (133 aa)
            
  0.967
PHB7
Prohibitin-7, mitochondrial; Prohibitin probably acts as a holdase/unfoldase for the stabilization of newly synthesized mitochondrial proteins (278 aa)
            
  0.831
EMB3105
50S ribosomal protein L18, chloroplastic; Binds 5S rRNA, forms part of the central protuberance of the 50S subunit (170 aa)
            
  0.783
AT2G21640
Encodes a protein of unknown function that is a marker for oxidative stress response (104 aa)
            
  0.699
UBP24
Ubiquitin carboxyl-terminal hydrolase 24; Recognizes and hydrolyzes the peptide bond at the C- terminal Gly of ubiquitin. Involved in the processing of poly- ubiquitin precursors as well as that of ubiquitinated proteins (By similarity) (551 aa)
      
 
  0.656
NDB4
External alternative NAD(P)H-ubiquinone oxidoreductase B4, mitochondrial; Alternative NADH-ubiquinone oxidoreductase which catalyzes the oxidation of mitochondrial NADH does not translocate protons across the inner mitochondrial membrane (By similarity). NAD(P)H dehydrogenase; more efficient on NADH (582 aa)
      
   
  0.624
PRPS20
Chloroplast 30S ribosomal protein S20, putative; Binds directly to 16S ribosomal RNA; Belongs to the bacterial ribosomal protein bS20 family (202 aa)
      
      0.568
UBP22
Ubiquitin carboxyl-terminal hydrolase 22; Recognizes and hydrolyzes the peptide bond at the C- terminal Gly of ubiquitin. Involved in the processing of poly- ubiquitin precursors as well as that of ubiquitinated proteins (By similarity) (557 aa)
      
 
  0.559
PSRP3/1
30S ribosomal protein 3-1, chloroplastic; Probably a ribosomal protein or a ribosome-associated protein; Belongs to the chloroplast-specific ribosomal protein cS23 family (166 aa)
      
      0.555
PRPL28
50S ribosomal protein L28, chloroplastic; Ribosomal L28 family; Its function is described as structural constituent of ribosome; Involved in translation; Located in ribosome, chloroplast, membrane; Expressed in 22 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- Ribosomal protein L28 (InterPro-IPR001383); Has 3594 Blast hits to 3594 proteins in 1265 species- Archae - 0; Bacteria - 2589; Metazoa - 1; Fungi - 7; Plants - 57; Viruses - 0; Other Eukaryotes - 940 (source- NCBI BLink) (143 aa)
      
      0.551
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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