STRINGSTRING
AT1G09220 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G09220" - Pentatricopeptide repeat-containing protein in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G09220Pentatricopeptide repeat-containing protein (504 aa)    
Predicted Functional Partners:
AT1G78930
Mitochondrial transcription termination factor family protein (591 aa)
     
 
  0.542
AT1G61990
Mitochondrial transcription termination factor family protein (414 aa)
     
 
  0.527
AT5G64950
Mitochondrial transcription termination factor family protein (391 aa)
       
 
  0.514
AT4G19650
Mitochondrial transcription termination factor family protein (575 aa)
       
 
  0.514
AT3G18870
Mitochondrial transcription termination factor family protein (274 aa)
       
 
  0.514
AT2G34620
Transcription termination factor-like protein (303 aa)
       
 
  0.514
AT1G62490
Mitochondrial transcription termination factor family protein (334 aa)
       
 
  0.514
AT1G62150
Mitochondrial transcription termination factor family protein (463 aa)
       
 
  0.514
AT1G62085
Mitochondrial transcription termination factor family protein (461 aa)
       
 
  0.514
AT1G56380
Mitochondrial transcription termination factor family protein (399 aa)
       
 
  0.514
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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