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AT1G09230 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G09230" - RNA-binding (RRM/RBD/RNP motifs) family protein in Arabidopsis thaliana
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query proteins and first shell of interactors
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second shell of interactors
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proteins of unknown 3D structure
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
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textmining
co-expression
protein homology
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AT1G09230RNA-binding (RRM/RBD/RNP motifs) family protein; Component of minor spliceosome required for U12-type intron splicing and alternative splicing of many introns. Binds specifically to U12 snRNA, which is necessary for branch-point site recognition. Required for normal plant development (442 aa)    
Predicted Functional Partners:
AT2G43370
RNA-binding (RRM/RBD/RNP motifs) family protein; May facilitate 5’ splice site recognition in the minor spliceosome. May be involved in interactions with components of the major spliceosome bound to the pyrimidine tract of an upstream U2-type intron (333 aa)
     
 
  0.995
AT3G04160
Uncharacterized protein; Likely involved in U12-type 5’ splice site recognition (714 aa)
     
   
  0.964
AT4G16060
Uncharacterized protein (289 aa)
           
  0.963
AT2G46200
Uncharacterized protein (382 aa)
           
  0.960
RS2Z33
Arginine/serine-rich zinc knuckle-containing protein 33; Splicing factor involved in constitutive and/or alternative splicing. Regulates the splicing of its own pre-mRNA and the alternative splicing of RS30, RS31 and RS34. Associates the cyclin-depedent kinase G1 (CDKG1) with the spliceosome and recruits it to U1 snRNP to facilitate splicing (290 aa)
         
  0.958
SR30
Splicing factor, arginine/serine-rich 1/9; Regulatory splicing factor that modulates alternative splicing and gene expression in specific cell types. Autoregulates its own expression. Probably involved in intron recognition and spliceosome assembly (268 aa)
     
 
  0.954
SR34
Pre-mRNA-splicing factor SF2; General splicing factor. Can promote splice site selection in vitro presumably by antagonizing the effects of the A1 heterogeneous nuclear ribonucleoprotein. May have an essential function during early plant development (303 aa)
     
 
  0.940
AT4G21660
Splicing factor 3B subunit 2 (598 aa)
     
 
    0.919
NRPB2
DNA-directed RNA polymerase II subunit RPB2; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Second largest component of RNA polymerase II which synthesizes mRNA precursors and many functional non-coding RNAs. Proposed to contribute to the polymerase catalytic activity and forms the polymerase active center together with the largest subunit. Pol II is the central component of the basal RNA polymerase II transcription machinery. It is composed of mobile elements that move relative to each other. NRPB2 is [...] (1188 aa)
     
 
    0.916
NRPB1
RNA polymerase II large subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Largest and catalytic component of RNA polymerase II which synthesizes mRNA precursors and many functional non-coding RNAs. Forms the polymerase active center together with the second largest subunit. Pol II is the central component of the basal RNA polymerase II transcription machinery. It is composed of mobile elements that move relative to each other. NRPB1 is part of the core element with the central large cleft, the cl [...] (1839 aa)
     
 
    0.909
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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