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U2A protein (Arabidopsis thaliana) - STRING interaction network
"U2A" - U2 small nuclear ribonucleoprotein A in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
U2AU2 small nuclear ribonucleoprotein A; This protein is associated with sn-RNP U2. It helps the A’ protein to bind stem loop IV of U2 snRNA (By similarity) (249 aa)    
Predicted Functional Partners:
U1A
Spliceosomal protein U1A; Involved in nuclear pre-mRNA splicing (By similarity). Seems to not be involved in polyadenylation (250 aa)
     
  0.999
U2B'
U2 small nuclear ribonucleoprotein B; Involved in nuclear pre-mRNA splicing (232 aa)
     
  0.999
AT3G07590
Small nuclear ribonucleoprotein D1 (114 aa)
     
  0.999
U1-70K
Encodes U1 snRNP 70K; Mediates the splicing of pre-mRNA by binding to the loop I region of U1-snRNA (427 aa)
     
  0.998
AT1G06960
RNA recognition motif-containing protein; Involved in nuclear pre-mRNA splicing (229 aa)
     
  0.998
AT2G18740
Putative small nuclear ribonucleoprotein (88 aa)
     
  0.998
ATO
ATROPOS (504 aa)
     
  0.997
AT3G18790
pre-mRNA-splicing factor ISY1 (300 aa)
     
  0.997
AT5G64270
Putative splicing factor (1269 aa)
     
  0.997
SmD3
snRNP core protein SMD3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome (By similarity). May play a minor role in the splicing of cellular pre-mRNAs (PubMed-21421416) (128 aa)
     
  0.997
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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