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STRINGSTRING
COBL6 protein (Arabidopsis thaliana) - STRING interaction network
"COBL6" - COBRA-like protein 6 precursor in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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COBL6COBRA-like protein 6 precursor (COBL6); Contains the following InterPro domains- Glycosyl-phosphatidyl inositol-anchored, plant (InterPro-IPR006918), COBRA-like (InterPro-IPR017391); BEST Arabidopsis thaliana protein match is- COBRA-like protein 1 precursor (TAIR-AT3G02210.1); Has 376 Blast hits to 369 proteins in 30 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 376; Viruses - 0; Other Eukaryotes - 0 (source- NCBI BLink) (454 aa)    
Predicted Functional Partners:
AT3G07720
Galactose oxidase/kelch repeat superfamily protein; Contains the following InterPro domains- Galactose oxidase/kelch, beta-propeller (InterPro-IPR011043), Kelch repeat type 1 (InterPro-IPR006652), Kelch-type beta propeller (InterPro-IPR015915); BEST Arabidopsis thaliana protein match is- nitrile specifier protein 5 (TAIR-AT5G48180.1); Has 10920 Blast hits to 5857 proteins in 349 species- Archae - 8; Bacteria - 366; Metazoa - 5368; Fungi - 1057; Plants - 2178; Viruses - 16; Other Eukaryotes - 1927 (source- NCBI BLink) (329 aa)
           
  0.695
scpl31
Serine carboxypeptidase-like 31; Probable carboxypeptidase; Belongs to the peptidase S10 family (495 aa)
           
  0.695
AT3G12900
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; Its function is described as oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity; Involved in biological_process unknown; Located in cellular_component unknown; Expressed in root; Contains the following InterPro domains- Oxoglutarate/iron-dependent oxygenase (InterPro-IPR005123); BEST Arabidopsis thaliana protein match is- 2-oxoglutarate (2OG) and Fe [...] (357 aa)
     
   
  0.675
MTPA2
Metal tolerance protein A2; Member of Zinc transporter (ZAT) family. Contributes to basic cellular Zn tolerance and controls Zn partitioning, particularly under conditions of high rates of Zn influx into the root symplasm. Localizes to the vacuolar membrane (432 aa)
     
   
  0.672
AT4G09110
Putative RING-H2 finger protein ATL35; RING/U-box superfamily protein; Its function is described as zinc ion binding; Located in endomembrane system; Contains the following InterPro domains- Zinc finger, RING-type (InterPro-IPR001841), Zinc finger, C3HC4 RING-type (InterPro-IPR018957); BEST Arabidopsis thaliana protein match is- RING/U-box superfamily protein (TAIR-AT4G09120.1); Has 9318 Blast hits to 9279 proteins in 280 species- Archae - 0; Bacteria - 2; Metazoa - 2438; Fungi - 673; Plants - 4918; Viruses - 43; Other Eukaryotes - 1244 (source- NCBI BLink) (302 aa)
           
  0.667
AT3G61410
BEST Arabidopsis thaliana protein match is- U-box domain-containing protein kinase family protein (TAIR-AT2G45910.1); Has 232 Blast hits to 229 proteins in 13 species- Archae - 0; Bacteria - 0; Metazoa - 13; Fungi - 0; Plants - 218; Viruses - 0; Other Eukaryotes - 1 (source- NCBI BLink) (294 aa)
           
  0.667
AT3G13600
IQ domain-containing protein IQM2; May be involved in biotic and abiotic stress responses (605 aa)
           
  0.667
AT1G14185
Glucose-methanol-choline (GMC) oxidoreductase family protein; Its function is described as aldehyde-lyase activity, oxidoreductase activity, acting on CH-OH group of donors, FAD binding; Involved in alcohol metabolic process; Located in endomembrane system; Contains the following InterPro domains- Glucose-methanol-choline oxidoreductase, N-terminal (InterPro-IPR000172), Glucose-methanol-choline oxidoreductase (InterPro-IPR012132), Glucose-methanol-choline oxidoreductase, C-terminal (InterPro-IPR007867); BEST Arabidopsis thaliana protein match is- Glucose-methanol-choline (GMC) oxidored [...] (503 aa)
           
  0.646
AT2G20030
Putative RING-H2 finger protein ATL12; RING/U-box superfamily protein; Its function is described as zinc ion binding; Located in endomembrane system; Expressed in stem, root, flower, stamen; Expressed during 4 anthesis; Contains the following InterPro domains- Zinc finger, RING-type (InterPro-IPR001841), Zinc finger, C3HC4 RING-type (InterPro-IPR018957); BEST Arabidopsis thaliana protein match is- RING/U-box superfamily protein (TAIR-AT4G28890.1); Has 9596 Blast hits to 9571 proteins in 288 species- Archae - 0; Bacteria - 6; Metazoa - 2467; Fungi - 781; Plants - 5028; Viruses - 54; Oth [...] (390 aa)
           
  0.626
MTPA1
Cation efflux family protein; Involved in sequestration of excess zinc in the cytoplasm into vacuoles to maintain zinc homeostasis (334 aa)
           
  0.586
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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