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AT1G09800 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G09800" - tRNA pseudouridine synthase A in Arabidopsis thaliana
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Neighborhood
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Cooccurence
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[Homology]
Score
AT1G09800tRNA pseudouridine synthase A (372 aa)    
Predicted Functional Partners:
NAP57
Homologue of NAP57; Plays a central role in ribosomal RNA processing. Probable catalytic subunit of H/ACA small nucleolar ribonucleoprotein (H/ACA snoRNP) complex, which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine (’psi’) residues may serve to stabilize the conformation of rRNAs (By similarity) (565 aa)
     
  0.750
AT3G49080
Small subunit ribosomal protein S9 (430 aa)
   
   
  0.730
AT5G64670
Ribosomal protein L18e/L15 (281 aa)
   
   
  0.715
RPL3P
50S ribosomal protein L3-2; One of the primary rRNA binding proteins, it binds directly near the 3’-end of the 23S rRNA, where it nucleates assembly of the 50S subunit (324 aa)
   
 
  0.712
AT5G14460
tRNA pseudouridine synthase B (540 aa)
     
  0.700
EMB2207
Ribosomal protein 1 (389 aa)
   
 
  0.696
AT1G63660
GMP-synthase-C and glutamine amidotransferase domain-containing protein (534 aa)
   
   
  0.680
AT2G31610
40S ribosomal protein S3-1 (250 aa)
   
 
  0.676
At5g47320
Ribosomal protein S19; The RNA-binding domain found in RPS19 may functionally replaces the missing mitochondrial RPS13 (212 aa)
   
   
  0.670
AT5G09770
Ribosomal protein L17 family protein (160 aa)
   
   
  0.662
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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