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STRINGSTRING
AT1G09820 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G09820" - Pentatricopeptide repeat in Arabidopsis thaliana
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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AT1G09820Pentatricopeptide repeat (PPR-like) superfamily protein; Contains the following InterPro domains- Pentatricopeptide repeat (InterPro-IPR002885); BEST Arabidopsis thaliana protein match is- Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR-AT5G39710.1); Has 57260 Blast hits to 15041 proteins in 306 species- Archae - 1; Bacteria - 71; Metazoa - 917; Fungi - 972; Plants - 53378; Viruses - 0; Other Eukaryotes - 1921 (source- NCBI BLink) (606 aa)    
Predicted Functional Partners:
AT4G17620
Decapping nuclease DXO homolog, chloroplastic; Ribonuclease that specifically degrades pre-mRNAs with a defective 5’ end cap and is part of a pre-mRNA capping quality control; Belongs to the DXO/Dom3Z family (544 aa)
           
  0.903
GDC1
Protein LHCP TRANSLOCATION DEFECT; Involved in the import of light-harvesting complex proteins (LHCP) and subsequent routing of these proteins to the chloroplast signal recognition particle (SRP) pathway (175 aa)
           
  0.794
AT3G12590
Unknown protein; Involved in biological_process unknown; Located in chloroplast; Has 50 Blast hits to 41 proteins in 15 species- Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 5 (source- NCBI BLink) (1184 aa)
           
  0.642
AT1G15920
Polynucleotidyl transferase, ribonuclease H-like superfamily protein; Ubiquitous transcription factor required for a diverse set of processes. It is a component of the CCR4 complex involved in the control of gene expression (By similarity) (286 aa)
           
  0.634
AT2G41950
DNA-directed RNA polymerase subunit beta; Unknown protein; Its function is described as molecular_function unknown; Involved in biological_process unknown; Located in chloroplast, plant-type cell wall; Expressed in 22 plant structures; Expressed during 13 growth stages; Has 53 Blast hits to 53 proteins in 24 species- Archae - 0; Bacteria - 27; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source- NCBI BLink) (266 aa)
           
  0.632
AT2G21380
Kinesin-like protein KIN-7M, chloroplastic; Kinesin motor family protein; Its function is described as microtubule motor activity, zinc ion binding, ATP binding; Involved in microtubule-based movement; Located in chloroplast; Expressed in 23 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- Kinesin, motor region, conserved site (InterPro-IPR019821), Zinc finger, RING-type (InterPro-IPR001841), Kinesin, motor domain (InterPro-IPR001752); BEST Arabidopsis thaliana protein match is- Kinesin motor family protein (TAIR-AT4G39050.1); Has 67269 Blas [...] (1058 aa)
           
  0.632
AT4G34090
Cyclin delta-3; Unknown protein; Its function is described as molecular_function unknown; Involved in biological_process unknown; Expressed in 22 plant structures; Expressed during 13 growth stages; BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT2G23370.1) (390 aa)
           
  0.626
AT4G35720
Arabidopsis protein of unknown function (DUF241); Expressed in 6 plant structures; Expressed during 4 anthesis, C globular stage; Contains the following InterPro domains- Protein of unknown function DUF241, plant (InterPro-IPR004320); BEST Arabidopsis thaliana protein match is- Arabidopsis protein of unknown function (DUF241) (TAIR-AT4G35690.1); Has 1807 Blast hits to 1807 proteins in 277 species- Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source- NCBI BLink) (325 aa)
           
  0.625
AT4G35710
Arabidopsis protein of unknown function (DUF241); Contains the following InterPro domains- Protein of unknown function DUF241, plant (InterPro-IPR004320); BEST Arabidopsis thaliana protein match is- Arabidopsis protein of unknown function (DUF241) (TAIR-AT4G35690.1); Has 1807 Blast hits to 1807 proteins in 277 species- Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source- NCBI BLink) (283 aa)
           
  0.625
AT4G35660
Selection/upkeep of intraepithelial T-cells protein, putative (DUF241); Arabidopsis protein of unknown function (DUF241); Contains the following InterPro domains- Protein of unknown function DUF241, plant (InterPro-IPR004320); BEST Arabidopsis thaliana protein match is- Arabidopsis protein of unknown function (DUF241) (TAIR-AT4G35690.1); Has 1807 Blast hits to 1807 proteins in 277 species- Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source- NCBI BLink) (288 aa)
           
  0.625
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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