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AT1G09900 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G09900" - Pentatricopeptide repeat-containing protein in Arabidopsis thaliana
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query proteins and first shell of interactors
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second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
AT1G09900Pentatricopeptide repeat-containing protein (598 aa)    
Predicted Functional Partners:
SVR7
Suppressor of variegation 7; Involved in chloroplast RNA processing. Could bind RNA (702 aa)
     
     
0.642
BSM
BELAYA SMERT; Transcription termination factor required for processing and steady-state levels of plastid transcripts. Required for splicing of the chloroplastic Clp protease (ClpP) group IIa intron. Required for maturation of 16S rRNA and 23S rRNA in the chloroplast. Essential for embryogenesis (PubMed-21464319). Required for the maintenance of the correct levels of transcripts in the mitochondria and chloroplasts (541 aa)
     
      0.637
AT5G46580
Pentatricopeptide repeat-containing protein (711 aa)
     
     
0.609
SCA3
SCABRA 3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (993 aa)
     
 
  0.558
MURE
Mur-ligase, Mur-ligase-C and Mur-ligase-M domain-containing protein (772 aa)
     
        0.552
MEE40
Maternal effect embryo arrest 40; May be involved in female gametophyte development (754 aa)
     
     
0.545
AT4G30825
Pentatricopeptide repeat-containing protein (904 aa)
     
     
0.497
AT3G06980
DEAD-box ATP-dependent RNA helicase 50; Probably involved in resistance to biotic and abiotic stresses (781 aa)
     
        0.493
FLN2
Fructokinase-like 2; Required for proper chloroplast development, most likely through regulating plastid-encoded polymerase (PEP) dependent chloroplast transcription. Acts as a component of the transcriptionally active plastid chromosome that is required for plastid gene expression (616 aa)
     
        0.491
EMB3108
EMBRYO DEFECTIVE 3108 (581 aa)
     
        0.489
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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