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AT1G09920 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G09920" - TRAF-type zinc finger-related in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G09920TRAF-type zinc finger-related (192 aa)    
Predicted Functional Partners:
AT4G27680
26S proteasome regulatory particle chain RPT6-like protein (398 aa)
           
  0.448
AT5G27330
Prefoldin chaperone subunit family protein (628 aa)
           
  0.426
AT5G03900
Iron-sulfur assembly-like protein (523 aa)
           
  0.426
AT4G13590
Uncharacterized protein (359 aa)
           
  0.426
AT3G54390
Sequence-specific DNA binding transcription factor (296 aa)
           
  0.426
AT3G32930
Uncharacterized protein (249 aa)
           
  0.426
AT3G02900
Uncharacterized protein (162 aa)
           
  0.426
AT1G33810
Uncharacterized protein (138 aa)
           
  0.426
AT2G32240
Uncharacterized protein (1333 aa)
           
  0.422
AT4G32250
Protein kinase family protein (611 aa)
           
  0.420
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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