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AT1G09920 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G09920" - TRAF-type zinc finger-related in Arabidopsis thaliana
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
AT1G09920TRAF-type zinc finger-related; BEST Arabidopsis thaliana protein match is- Ubiquitin fusion degradation UFD1 family protein (TAIR-AT4G15420.1); Has 897 Blast hits to 860 proteins in 162 species- Archae - 0; Bacteria - 0; Metazoa - 570; Fungi - 106; Plants - 68; Viruses - 0; Other Eukaryotes - 153 (source- NCBI BLink) (192 aa)    
Predicted Functional Partners:
AT5G07810
SNF2 domain-containing protein / helicase domain-containing protein / HNH endonuclease domain-containing protein; Its function is described as helicase activity, DNA binding, ATP binding, nucleic acid binding, endonuclease activity; Expressed in 13 plant structures; Expressed during 8 growth stages; Contains the following InterPro domains- DEAD-like helicase, N-terminal (InterPro-IPR014001), DNA/RNA helicase, C-terminal (InterPro-IPR001650), HNH endonuclease (InterPro-IPR002711), Helicase, superfamily 1/2, ATP-binding domain (InterPro-IPR014021), SNF2-related (InterPro-IPR000330); BEST [...] (1190 aa)
           
  0.769
AT1G18680
HNH endonuclease domain-containing protein; Its function is described as endonuclease activity, nucleic acid binding; Involved in N-terminal protein myristoylation; Located in chloroplast; Expressed in 7 plant structures; Expressed during L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; Contains the following InterPro domains- HNH nuclease (InterPro-IPR003615), HNH endonuclease (InterPro-IPR002711); BEST Arabidopsis thaliana protein match is- HNH endonuclease (TAIR-AT3G47490.1); Has 84 Blast hits to 84 proteins in 23 species- Arch [...] (186 aa)
           
  0.769
AT4G27680
P-loop containing nucleoside triphosphate hydrolases superfamily protein; Its function is described as nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; Located in endomembrane system; Expressed in 23 plant structures; Expressed during 14 growth stages; Contains the following InterPro domains- ATPase, AAA+ type, core (InterPro-IPR003593), ATPase, AAA-type, core (InterPro-IPR003959), ATPase, AAA-type, conserved site (InterPro-IPR003960); BEST Arabidopsis thaliana protein match is- P-loop containing nucleoside triphosphate hydrolases superfamily protei [...] (398 aa)
           
  0.699
AT3G52230
Uncharacterized protein F4F15.340; Unknown protein; Its function is described as molecular_function unknown; Involved in biological_process unknown; Located in chloroplast outer membrane, chloroplast thylakoid membrane, chloroplast, chloroplast envelope; Expressed in 24 plant structures; Expressed during 13 growth stages; Has 29 Blast hits to 29 proteins in 12 species- Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source- NCBI BLink) (145 aa)
           
  0.699
AT2G32240
Early endosome antigen; Its function is described as molecular_function unknown; Involved in response to cadmium ion; Located in plasma membrane; Expressed in 25 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- Prefoldin (InterPro-IPR009053); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT1G05320.3); Has 470429 Blast hits to 168274 proteins in 4282 species- Archae - 6896; Bacteria - 131956; Metazoa - 175525; Fungi - 33166; Plants - 25441; Viruses - 2243; Other Eukaryotes - 95202 (source- NCBI BLink) (1333 aa)
           
  0.692
AT3G49350
Ypt/Rab-GAP domain of gyp1p superfamily protein; Its function is described as RAB GTPase activator activity; Involved in regulation of Rab GTPase activity; Located in intracellular, chloroplast; Expressed in 22 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- RabGAP/TBC (InterPro-IPR000195); BEST Arabidopsis thaliana protein match is- Ypt/Rab-GAP domain of gyp1p superfamily protein (TAIR-AT5G24390.1); Has 4289 Blast hits to 3657 proteins in 225 species- Archae - 0; Bacteria - 0; Metazoa - 2316; Fungi - 775; Plants - 693; Viruses - 0; Other E [...] (539 aa)
           
  0.691
AT1G68680
SH3/FCH domain protein; Unknown protein; Its function is described as molecular_function unknown; Involved in biological_process unknown; Located in chloroplast; Expressed in 23 plant structures; Expressed during 16 growth stages; Has 20 Blast hits to 20 proteins in 11 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source- NCBI BLink) (75 aa)
           
  0.668
AT4G16450
Uncharacterized protein At4g16450; Unknown protein; Its function is described as molecular_function unknown; Involved in photorespiration; Located in mitochondrion, mitochondrial membrane, mitochondrial respiratory chain complex I, respiratory chain complex I; Expressed in 25 plant structures; Expressed during 15 growth stages (106 aa)
           
  0.667
WPP1
WPP domain-containing protein 1; WPP family members contains an NE targeting domain. This domain, called the WPP domain after a highly conserved Trp-Pro-Pro motif, is necessary and sufficient for NE targeting of WPP1. RNAi suppression of WPP1 resulted in reduced mitotic activity (155 aa)
           
  0.645
AT4G32250
Protein kinase superfamily protein; Its function is described as protein kinase activity, kinase activity, ATP binding; Involved in protein amino acid phosphorylation; Located in chloroplast; Expressed in 26 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- Protein kinase, catalytic domain (InterPro-IPR000719), Serine-threonine/tyrosine-protein kinase (InterPro-IPR001245), Protein kinase-like domain (InterPro-IPR011009); BEST Arabidopsis thaliana protein match is- protein kinases;ubiquitin-protein ligases (TAIR-AT5G13530.2); Has 69872 Blast h [...] (611 aa)
           
  0.643
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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