• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
AT1G10300 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G10300" - Nucleolar GTP-binding protein 1 in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G10300Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit (687 aa)    
Predicted Functional Partners:
AT5G06360
Ribosomal protein S8e family protein; Contains the following InterPro domains- Ribosomal protein S8e/ribosomal biogenesis NSA2= (InterPro-IPR022309); Has 1807 Blast hits to 1807 proteins in 277 species- Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source- NCBI BLink) (260 aa)
     
 
  0.993
AtNug2
GTP-binding family protein; GTPase involved in pre-60S ribosomal subunit maturation (576 aa)
     
 
  0.993
AT2G44860
Probable ribosome biogenesis protein RLP24; Involved in the biogenesis of the 60S ribosomal subunit. Ensures the docking of NOG1 to pre-60S particles (159 aa)
     
 
  0.993
AT1G25260
Ribosomal protein L10 family protein; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes (235 aa)
     
 
  0.993
AT3G23620
Ribosomal RNA processing Brix domain protein; Its function is described as molecular_function unknown; Involved in biological_process unknown; Located in nucleolus; Expressed in 23 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- Brix domain (InterPro-IPR007109); Has 435 Blast hits to 425 proteins in 212 species- Archae - 0; Bacteria - 0; Metazoa - 152; Fungi - 138; Plants - 54; Viruses - 0; Other Eukaryotes - 91 (source- NCBI BLink) (314 aa)
     
 
  0.992
AT5G14520
Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit (By similarity). Plays an essential role in cell growth and survival through its regulation of ribosome biogenesis and mitotic progression. Required for normal root cell growth and differentiation (590 aa)
     
 
  0.992
AT5G04600
RNA-binding (RRM/RBD/RNP motifs) family protein; Its function is described as RNA binding, nucleotide binding, nucleic acid binding; Involved in biological_process unknown; Located in nucleolus; Expressed in 22 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- RNA recognition motif, RNP-1 (InterPro-IPR000504), Nucleotide-binding, alpha-beta plait (InterPro-IPR012677); BEST Arabidopsis thaliana protein match is- RNA recognition motif (RRM)-containing protein (TAIR-AT3G47120.1); Has 1807 Blast hits to 1807 proteins in 277 species- Archae - 0; B [...] (222 aa)
     
 
  0.991
AT2G40360
Transducin/WD40 repeat-like superfamily protein; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit (By similarity). Plays an essential role in cell growth and survival through its regulation of ribosome biogenesis and mitotic progression; Belongs to the WD repeat BOP1/ERB1 family (753 aa)
     
 
  0.991
AT5G15550
Transducin/WD40 repeat-like superfamily protein; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat WDR12/YTM1 family (433 aa)
     
 
  0.991
EMB3129
DAR GTPase 3, chloroplastic; GTPase that may function in chloroplast ribosome assembly (Probable); Belongs to the TRAFAC class YlqF/YawG GTPase family (372 aa)
     
 
  0.991
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
Server load: low (11%) [HD]