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SNL6 protein (Arabidopsis thaliana) - STRING interaction network
"SNL6" - Paired amphipathic helix protein Sin3-like 6 in Arabidopsis thaliana
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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SNL6Paired amphipathic helix protein Sin3-like 6; Acts as a transcriptional repressor. Plays roles in regulating gene expression and genome stability (By similarity) (1122 aa)    
Predicted Functional Partners:
ALY3
ALWAYS EARLY 3 (ALY3); Its function is described as DNA binding; Involved in biological_process unknown; Located in cellular_component unknown; Expressed in 23 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- SANT, DNA-binding (InterPro-IPR001005), Homeodomain-like (InterPro-IPR009057), Myb, DNA-binding (InterPro-IPR014778), DIRP (InterPro-IPR010561); BEST Arabidopsis thaliana protein match is- DIRP ;Myb-like DNA-binding domain (TAIR-AT3G05380.4); Has 30201 Blast hits to 17322 proteins in 780 species- Archae - 12; Bacteria - 1396; Metazoa - [...] (1132 aa)
     
   
  0.903
ALY2
DIRP ;Myb-like DNA-binding domain; ALWAYS EARLY 2 (ALY2); Its function is described as DNA binding, sequence-specific DNA binding transcription factor activity; Contains the following InterPro domains- SANT, DNA-binding (InterPro-IPR001005), DIRP (InterPro-IPR010561); BEST Arabidopsis thaliana protein match is- DIRP ;Myb-like DNA-binding domain (TAIR-AT5G27610.1) (1052 aa)
     
   
  0.903
TRFL1
Telomere repeat-binding protein 2; Encodes a protein that specifically binds plant telomeric DNA (TTTAGGG)n repeats. Involved in bending DNA. Expressed throughout the plant with highest levels in flowers (553 aa)
           
  0.834
AT3G52250
Duplicated homeodomain-like superfamily protein; Encodes a protein with a putative role in mRNA splicing (1656 aa)
     
 
  0.816
AT3G13350
HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain; Binds preferentially DNA with A/T-rich content (319 aa)
     
 
  0.766
AT1G76110
HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain; Binds preferentially DNA with A/T-rich content. Required for karyogamy during female gametophyte development, when the two polar nuclei fuse to form the diploid central cell nucleus (338 aa)
     
 
  0.766
AT1G55650
HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain; Binds preferentially DNA with A/T-rich content (337 aa)
     
 
  0.766
AT1G04880
HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain; Binds preferentially DNA with A/T-rich content (448 aa)
     
 
  0.766
ELF6
Zinc finger (C2H2 type) family protein / transcription factor jumonji (jmj) family protein; Early Flowering 6 (ELF6) encodes a Jumonji N/C and zinc finger domain-containing protein that acts as a repressor in the photoperiod pathway. ELF6 interacts with BES1 in a Y2H assay, in vitro, and in Arabidosis protoplasts (based on BiFC). ELF6 may play a role in brassinosteroid signaling by affecting histone methylation in the promoters of BR-responsive genes; Belongs to the JHDM3 histone demethylase family (1340 aa)
     
 
  0.751
REF6
Lysine-specific demethylase REF6; Histone demethylase that demethylates ’Lys-27’ (H3K27me) of histone H3. Demethylates both tri- (H3K27me3) and di-methylated (H3K27me2) H3K27me. Demethylates also H3K4me3/2 and H3K36me3/2 in an in vitro assay. Involved in the transcriptional regulation of hundreds of genes regulating developmental patterning and responses to various stimuli. Binds DNA via its four zinc fingers in a sequence-specific manner, 5’-CTCTGYTY-3’, to promote the demethylation of H3K27me3 and the regulation of organ boundary formation. Involved in the regulation of flowering tim [...] (1360 aa)
     
 
  0.748
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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