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STRINGSTRING
emb2004 protein (Arabidopsis thaliana) - STRING interaction network
"emb2004" - Uncharacterized protein At1g10510 in Arabidopsis thaliana
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query proteins and first shell of interactors
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second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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emb2004Uncharacterized protein At1g10510; Embryo defective 2004 (emb2004); Involved in embryo development ending in seed dormancy; Located in mitochondrion, chloroplast, plastid, chloroplast envelope; Expressed in 23 plant structures; Expressed during 13 growth stages; BEST Arabidopsis thaliana protein match is- RAN GTPase activating protein 1 (TAIR-AT3G63130.2); Has 21704 Blast hits to 6781 proteins in 315 species- Archae - 0; Bacteria - 982; Metazoa - 9646; Fungi - 490; Plants - 1111; Viruses - 0; Other Eukaryotes - 9475 (source- NCBI BLink) (605 aa)    
Predicted Functional Partners:
UBQ1
Ubiquitin-60S ribosomal protein L40-1; Ubiquitin- exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked- Lys-11-linked is invol [...] (128 aa)
       
      0.779
AT2G36170.1
Ubiquitin supergroup;Ribosomal protein L40e; Its function is described as structural constituent of ribosome; Involved in translation; Located in cytosolic large ribosomal subunit, nucleolus; Expressed in 24 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- Ribosomal protein L40e (InterPro-IPR001975), Ubiquitin subgroup (InterPro-IPR019956), Ubiquitin conserved site (InterPro-IPR019954), Ubiquitin (InterPro-IPR000626), Ubiquitin supergroup (InterPro-IPR019955); BEST Arabidopsis thaliana protein match is- ubiquitin extension protein 1 (TAIR-AT [...] (128 aa)
       
      0.779
AT5G14710
Contains the following InterPro domains- Proteasome assembly chaperone 3 (InterPro-IPR018788); Has 120 Blast hits to 120 proteins in 47 species- Archae - 0; Bacteria - 0; Metazoa - 62; Fungi - 2; Plants - 49; Viruses - 0; Other Eukaryotes - 7 (source- NCBI BLink) (124 aa)
           
  0.751
EMB2421
FAD/NAD(P)-binding oxidoreductase family protein; A locus involved in embryogenesis. Mutations in this locus result in embryo lethality (709 aa)
     
   
  0.726
CRR42
DUF3148 family protein; Unknown protein; Contains the following InterPro domains- Protein of unknown function DUF3148 (InterPro-IPR021495); Has 30201 Blast hits to 17322 proteins in 780 species- Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source- NCBI BLink) (108 aa)
   
   
  0.716
RPL4
50S ribosomal protein L4, chloroplastic; This protein binds directly and specifically to 23S rRNA (By similarity). May play a role in plastid transcriptional regulation; Belongs to the universal ribosomal protein uL4 family (282 aa)
     
   
  0.712
APTX
Transcription factor bHLH140; Encodes a protein that has adenylylsulfate sulfohydrolase activity (E.C. 3.6.2.1) in vitro (912 aa)
           
  0.672
PDE247
Pentatricopeptide repeat-containing protein At1g05750, chloroplastic; Encodes a pentatricopeptide repeat protein required for editing of rpoA and clpP chloroplast transcripts (500 aa)
           
  0.670
EMB2279
Pentatricopeptide repeat-containing protein At1g30610, chloroplastic; Mutations in this locus result in embryo lethality. Embryo shape at seed maturity is globular (1006 aa)
     
   
  0.668
AT1G56500
Haloacid dehalogenase-like hydrolase family protein; Required to maintain light harvesting efficiency, especially during nonphotochemical quenching (NPQ) recovery, via the regulation of chlorophyll excited-state lifetime probably by preventing the formation of a slowly reversible form of antenna quenching; In the C-terminal section; belongs to the thioredoxin family (1055 aa)
     
 
  0.665
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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