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PUB18 protein (Arabidopsis thaliana) - STRING interaction network
"PUB18" - Plant U-box 18 in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PUB18Plant U-box 18; Functions as an E3 ubiquitin ligase (697 aa)    
Predicted Functional Partners:
AIRP2
ABA Insensitive RING Protein 2 (242 aa)
           
  0.670
RDUF1
C3H4 type zinc finger protein (395 aa)
     
   
  0.645
FBX5
ARABIDILLO-1; Promotes lateral root initiation and development, independently of auxin (IAA) and abscisis acid (ABA) (930 aa)
           
  0.636
AIRP1
ABA Insensitive RING Protein 1 (208 aa)
           
  0.634
AT3G09770
LOSS OF GDU 2; Acts as an E3 ubiquitin-protein ligase, or as part of E3 complex, which accepts ubiquitin from specific E2 ubiquitin- conjugating enzymes and then transfers it to substrates (in vitro). Required for GLUTAMINE DUMPER 1(GDU1)-induced amino acid secretion and for amino acid homeostasis. Ubiquitinates GDU1 (in vitro) (388 aa)
           
  0.601
At3g60350
ARABIDILLO-2; Promotes lateral root initiation and development, independently of auxin (IAA) and abscisis acid (ABA) (928 aa)
           
  0.558
AT4G17420
Tryptophan RNA-binding attenuator protein-like (285 aa)
           
  0.556
AT5G56960
Putative transcription factor bHLH041 (466 aa)
           
  0.551
RDUF2
C3H4 type zinc finger protein (407 aa)
     
   
  0.528
RGLG1
RING domain ligase1; E3 ubiquitin-protein ligase that mediates the formation of ’Lys-63’-linked multiubiquitin chains. Regulates apical dominance by acting on the auxin transport proteins abundance (489 aa)
           
  0.508
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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