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TMN1 protein (Arabidopsis thaliana) - STRING interaction network
"TMN1" - Transmembrane nine 1 in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TMN1Transmembrane nine 1 (589 aa)    
Predicted Functional Partners:
AT1G31780
Uncharacterized protein (680 aa)
     
   
  0.917
AT5G16300
Vps51/Vps67 family (components of vesicular transport) protein (1068 aa)
     
   
  0.903
AT4G34450
Coatomer subunit gamma; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins (By similarity) (886 aa)
     
   
  0.876
AT5G11980
Conserved oligomeric Golgi complex component-related protein (569 aa)
     
   
  0.841
EYE
EMBRYO YELLOW (836 aa)
     
   
  0.827
AT3G62470
Pentatricopeptide repeat-containing protein (599 aa)
           
  0.801
AT5G02480
HSP20-like chaperone (508 aa)
           
  0.800
AT1G54850
HSP20-like chaperones superfamily protein (206 aa)
           
  0.800
AT1G67930
Golgi transport complex protein-related (832 aa)
     
   
  0.790
AT4G24840
Uncharacterized protein (756 aa)
     
   
  0.758
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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