STRINGSTRING
AT1G11470 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G11470" - Pentatricopeptide repeat in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G11470Pentatricopeptide repeat (PPR) superfamily protein (150 aa)    
Predicted Functional Partners:
AT1G72416
Chaperone DnaJ-domain containing protein (201 aa)
           
  0.735
AT1G33350
Pentatricopeptide repeat-containing protein (538 aa)
           
  0.670
AT1G32980
Subtilisin-like serine endopeptidase family protein (190 aa)
           
  0.670
AT1G20132
GDSL-like Lipase/Acylhydrolase superfamily protein (383 aa)
           
  0.609
AT2G19880
Nucleotide-diphospho-sugar transferases superfamily protein (520 aa)
           
  0.607
AT5G54620
Ankyrin repeat family protein (431 aa)
           
  0.605
AT4G10790
UBX domain-containing protein (480 aa)
           
  0.605
AT4G10720
Ankyrin repeat family protein (445 aa)
           
  0.605
AT1G11925
Stigma-specific stig1-like protein (140 aa)
           
  0.603
AT3G26720
Alpha-mannosidase (1019 aa)
           
  0.601
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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