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STRINGSTRING
RBP45B protein (Arabidopsis thaliana) - STRING interaction network
"RBP45B" - RNA-binding (RRM/RBD/RNP motifs) family protein in Arabidopsis thaliana
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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RBP45BRNA-binding (RRM/RBD/RNP motifs) family protein; Heterogeneous nuclear ribonucleoprotein (hnRNP)-protein binding the poly(A) tail of mRNA and probably involved in some steps of pre-mRNA maturation; Belongs to the polyadenylate-binding RBP45 family (405 aa)    
Predicted Functional Partners:
AT5G02140
Pathogenesis-related thaumatin superfamily protein; Its function is described as molecular_function unknown; Involved in response to other organism; Located in endomembrane system; Expressed in 7 plant structures; Expressed during F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; Contains the following InterPro domains- Thaumatin, conserved site (InterPro-IPR017949), Thaumatin, pathogenesis-related (InterPro-IPR001938); BEST Arabidopsis thaliana protein match is- Pathogenesis-related thaumatin superfamily protein (TAIR-AT1G [...] (294 aa)
           
  0.952
AT2G28790
Pathogenesis-related thaumatin superfamily protein; Contains the following InterPro domains- Thaumatin, pathogenesis-related (InterPro-IPR001938); BEST Arabidopsis thaliana protein match is- Pathogenesis-related thaumatin superfamily protein (TAIR-AT1G75800.1); Has 1542 Blast hits to 1521 proteins in 166 species- Archae - 0; Bacteria - 19; Metazoa - 54; Fungi - 86; Plants - 1377; Viruses - 0; Other Eukaryotes - 6 (source- NCBI BLink) (249 aa)
       
 
  0.951
AT1G77700
Pathogenesis-related thaumatin superfamily protein; Contains the following InterPro domains- Thaumatin, pathogenesis-related (InterPro-IPR001938); BEST Arabidopsis thaliana protein match is- thaumatin-like protein 3 (TAIR-AT1G75030.1); Has 1591 Blast hits to 1571 proteins in 178 species- Archae - 0; Bacteria - 39; Metazoa - 54; Fungi - 86; Plants - 1401; Viruses - 2; Other Eukaryotes - 9 (source- NCBI BLink) (356 aa)
           
  0.926
AT1G75800
Pathogenesis-related thaumatin superfamily protein; Its function is described as molecular_function unknown; Involved in response to other organism; Located in endomembrane system; Expressed in 22 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- Thaumatin, conserved site (InterPro-IPR017949), Thaumatin, pathogenesis-related (InterPro-IPR001938); BEST Arabidopsis thaliana protein match is- Pathogenesis-related thaumatin superfamily protein (TAIR-AT1G20030.2); Has 1631 Blast hits to 1621 proteins in 190 species- Archae - 2; Bacteria - 41; Meta [...] (330 aa)
           
  0.909
AT5G40020
Pathogenesis-related thaumatin superfamily protein; Its function is described as molecular_function unknown; Involved in response to other organism; Located in endomembrane system; Expressed in 13 plant structures; Expressed during 6 growth stages; Contains the following InterPro domains- Thaumatin, pathogenesis-related (InterPro-IPR001938); BEST Arabidopsis thaliana protein match is- Pathogenesis-related thaumatin superfamily protein (TAIR-AT4G38660.1); Has 1558 Blast hits to 1540 proteins in 173 species- Archae - 0; Bacteria - 31; Metazoa - 56; Fungi - 80; Plants - 1384; Viruses - 0; [...] (256 aa)
           
  0.903
AT4G38660
Pathogenesis-related thaumatin superfamily protein; Contains the following InterPro domains- Thaumatin, pathogenesis-related (InterPro-IPR001938); BEST Arabidopsis thaliana protein match is- THAUMATIN-LIKE PROTEIN 1 (TAIR-AT4G24180.1); Has 30201 Blast hits to 17322 proteins in 780 species- Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source- NCBI BLink) (345 aa)
           
  0.897
ATLP-1
Encodes a thaumatin-like protein (244 aa)
           
  0.897
AT1G73620
Pathogenesis-related thaumatin superfamily protein; Involved in response to other organism; Located in membrane; Expressed in 17 plant structures; Expressed during 9 growth stages; Contains the following InterPro domains- Thaumatin, conserved site (InterPro-IPR017949), Thaumatin, pathogenesis-related (InterPro-IPR001938); BEST Arabidopsis thaliana protein match is- Pathogenesis-related thaumatin superfamily protein (TAIR-AT1G18250.1); Has 1554 Blast hits to 1550 proteins in 171 species- Archae - 0; Bacteria - 25; Metazoa - 54; Fungi - 76; Plants - 1392; Viruses - 0; Other Eukaryotes - [...] (264 aa)
           
  0.861
AT4G36010
Pathogenesis-related thaumatin superfamily protein; Contains the following InterPro domains- Thaumatin, pathogenesis-related (InterPro-IPR001938); BEST Arabidopsis thaliana protein match is- Pathogenesis-related thaumatin superfamily protein (TAIR-AT2G17860.1); Has 1622 Blast hits to 1597 proteins in 186 species- Archae - 0; Bacteria - 48; Metazoa - 58; Fungi - 84; Plants - 1413; Viruses - 4; Other Eukaryotes - 15 (source- NCBI BLink) (301 aa)
           
  0.837
PABN1
Encodes a homolog of the protein PABN1, a polyadenylation factor subunit (265 aa)
     
 
  0.792
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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