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AT1G12080 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G12080" - Vacuolar calcium-binding protein-related in Arabidopsis thaliana
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G12080Vacuolar calcium-binding protein-related (138 aa)    
Predicted Functional Partners:
AT5G12000
Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (701 aa)
           
  0.607
AT1G27710
Glycine-rich protein family (212 aa)
           
  0.607
PI4KG1
Phosphoinositide 4-kinase gamma 1; The phosphorylation of phosphatidylinositol (PI) to PI4P is the first committed step in the generation of phosphatidylinositol 4,5-bisphosphate (PIP2), a precursor of the second messenger inositol 1,4,5-trisphosphate (InsP3) (561 aa)
           
  0.605
AT5G09780
B3 domain-containing protein REM23 (308 aa)
           
  0.600
AT3G59370
Vacuolar calcium-binding protein-related (95 aa)
     
   
  0.520
AT5G01200
Duplicated homeodomain-like superfamily protein (267 aa)
           
  0.502
AT1G75170
Sec.4-like phosphatidylinositol transfer-like protein (296 aa)
           
  0.502
AT1G50630
Uncharacterized protein (453 aa)
           
  0.502
AT1G07870
Protein kinase superfamily protein (538 aa)
           
  0.502
AT3G46770
B3 domain-containing protein REM22 (276 aa)
           
  0.499
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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