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AT1G12170 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G12170" - Putative F-box/kelch-repeat protein At1g12170 in Arabidopsis thaliana
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query proteins and first shell of interactors
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second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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AT1G12170Putative F-box/kelch-repeat protein At1g12170; F-box family protein; Contains the following InterPro domains- F-box domain, cyclin-like (InterPro-IPR001810), F-box domain, Skp2-like (InterPro-IPR022364), F-box associated domain, type 1 (InterPro-IPR006527), F-box associated interaction domain (InterPro-IPR017451); BEST Arabidopsis thaliana protein match is- F-box and associated interaction domains-containing protein (TAIR-AT1G12190.1); Has 1693 Blast hits to 1645 proteins in 47 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1691; Viruses - 0; Other Eukaryotes - 2 ( [...] (364 aa)    
Predicted Functional Partners:
AT2G15740
C2H2-like zinc finger protein; Its function is described as sequence-specific DNA binding transcription factor activity, zinc ion binding, nucleic acid binding; Involved in regulation of transcription; Located in intracellular; Expressed in leaf; Expressed during LP.12 twelve leaves visible; Contains the following InterPro domains- Zinc finger, C2H2-like (InterPro-IPR015880), Zinc finger, C2H2-type (InterPro-IPR007087); BEST Arabidopsis thaliana protein match is- C2H2-like zinc finger protein (TAIR-AT2G18490.1); Has 58 Blast hits to 58 proteins in 16 species- Archae - 0; Bacteria - 0; [...] (329 aa)
     
        0.422
AT3G13370
Unknown protein; Has 84 Blast hits to 50 proteins in 21 species- Archae - 0; Bacteria - 2; Metazoa - 51; Fungi - 6; Plants - 20; Viruses - 0; Other Eukaryotes - 5 (source- NCBI BLink) (188 aa)
     
        0.420
CID13
Polyadenylate-binding protein-interacting protein 13; RNA-binding protein, putative. Contains PAM2, PABC binding domain (320 aa)
     
        0.418
AT4G05630
B3 domain-containing protein At4g05630; Unknown protein; BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT4G12617.1); Has 22 Blast hits to 22 proteins in 3 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 0 (source- NCBI BLink) (124 aa)
     
        0.404
AT3G25750
Contains the following InterPro domains- F-box domain, cyclin-like (InterPro-IPR001810), Protein of unknown function DUF295 (InterPro-IPR005174); BEST Arabidopsis thaliana protein match is- F-box family protein with a domain of unknown function (DUF295) (TAIR-AT2G26160.1); Has 337 Blast hits to 336 proteins in 11 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 337; Viruses - 0; Other Eukaryotes - 0 (source- NCBI BLink) (348 aa)
     
        0.404
AT5G37520
NEP-interacting protein, putative (DUF239); Protein of Unknown Function (DUF239); Contains the following InterPro domains- Protein of unknown function DUF239, plant (InterPro-IPR004314); BEST Arabidopsis thaliana protein match is- Protein of Unknown Function (DUF239) (TAIR-AT2G24950.1); Has 1807 Blast hits to 1807 proteins in 277 species- Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source- NCBI BLink) (199 aa)
     
        0.402
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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