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AT1G12190 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G12190" - F-box and associated interaction domain-containing protein in Arabidopsis thaliana
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G12190F-box and associated interaction domain-containing protein (375 aa)    
Predicted Functional Partners:
AT1G03365
Zinc ion binding protein (823 aa)
           
  0.863
RFL1
RPS5-like 1; Disease resistance (R) protein (885 aa)
           
  0.810
AT3G20030
Putative F-box protein (402 aa)
     
 
 
0.743
NFC5
Histone-binding protein RBBP4; Core histone-binding subunit that may target chromatin assembly factors, chromatin remodeling factors and histone deacetylases to their histone substrates in a manner that is regulated by nucleosomal DNA (487 aa)
           
  0.732
AT5G41720
Uncharacterized protein (187 aa)
     
 
    0.730
AT3G51171
Putative F-box protein (256 aa)
     
 
 
0.730
AT3G42830
RING-box protein 1; Component of the SCF (SKP1-CUL1-F-box protein) E3 ubiquitin ligase complex, which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. The SCF complex plays a crucial role in regulating response to auxin and is essential for growth and development. Through the RING-type zinc finger, seems to recruit the E2 ubiquitination enzyme, to the complex and brings it into close proximity to the substrate (By similarity) (115 aa)
     
 
    0.730
AT3G21410
F-box/WD-40 repeat-containing protein 1 (410 aa)
     
 
 
0.730
AT3G17265
Putative F-box protein (345 aa)
     
 
 
0.730
AT2G04920
Putative F-box only protein 9 (376 aa)
     
 
 
0.730
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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