STRINGSTRING
NAC007 protein (Arabidopsis thaliana) - STRING interaction network
"NAC007" - NAC 007 in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NAC007NAC 007; Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5’- (T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3’, in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed-16103214, PubMed-25148240) (395 aa)    
Predicted Functional Partners:
VND7
Vascular related NAC-domain protein 7; Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5’- (T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3’, in the promoter of target genes (e.g. genes involved in secondary wall biosynthesis, cell wall modification such as xylan accumulation, and programmed cell death) (PubMed-20935069, PubMed-20488898, PubMed-22037706, PubMed-21284754). Involved in xylem formation in roots and shoots, especially regulating protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed-16103 [...] (324 aa)
     
 
0.793
MYB46
Myb domain protein 46; Transcription activator. Involved in the regulation of secondary wall biosynthesis in fibers and vessels (PubMed-17890373). Transcription activator of the mannan synthase CSLA9 that recognizes and binds to the DNA consensus sequence 5’- [AG][GT]T[AT]GGT[GA]-3’ cis-regulatory element of CSLA9 promoter (PubMed-24243147) (280 aa)
     
   
  0.694
XCP1
Xylem cysteine peptidase 1; Probable thiol protease (355 aa)
     
   
  0.653
MYB85
Myb domain protein 85 (266 aa)
           
  0.633
AT4G08160
Encodes a putative glycosyl hydrolase family 10 protein (xylanase) (752 aa)
     
   
  0.624
MYB83
Myb domain protein 83 (343 aa)
     
   
  0.615
IRX12
Laccase-4; Lignin degradation and detoxification of lignin-derived products (By similarity). Required for secondary xylem cell wall lignification (558 aa)
           
  0.601
XCP2
Xylem cysteine peptidase 2; Probable thiol protease (356 aa)
     
   
  0.572
MYB52
Myb domain protein 52 (249 aa)
           
  0.557
CSLB03
Cellulose synthase-like B3; Thought to be a Golgi-localized beta-glycan synthase that polymerize the backbones of noncellulosic polysaccharides (hemicelluloses) of plant cell wall (755 aa)
           
  0.552
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
Server load: low (19%) [HD]