STRINGSTRING
AT1G12470 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G12470" - Zinc ion binding in Arabidopsis thaliana
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G12470Zinc ion binding (988 aa)    
Predicted Functional Partners:
EMB2754
EMBRYO DEFECTIVE 2754 (1000 aa)
     
 
  0.997
VPS41
Vacuolar protein sorting 41; Required for vacuolar assembly and vacuolar traffic (980 aa)
     
 
  0.995
ATVPS33
Vacuolar protein sorting-associated protein 33-like protein; Involved in regulating membrane fusion at the tonoplast and the prevacuolar compartment (608 aa)
     
 
  0.994
VPS11
Vacuolar protein sorting 11; Involved in regulating membrane fusion at the tonoplast and the prevacuolar compartment (932 aa)
     
 
  0.994
VCL1
VACUOLELESS 1; Required for vacuole biogenesis and vacuole enlargment in dividing and expanding cells. Involved in the docking or fusion of prevacuolar vesicles. Important for the function of both male and female gametophytes, but is not essential for the germination and development of pollen (858 aa)
     
 
  0.992
AT1G22860
Vacuolar sorting protein 39 (961 aa)
     
 
  0.985
SETH5
Transducin family protein / WD-40 repeat family protein (1913 aa)
     
 
  0.985
VPS45
Vacuolar protein sorting 45; Involved in the protein transport to the vacuole, probably at the level of vesicle fusion at the trans-Golgi network (TGN) and not in transport from the TGN to the prevacuolar compartment. Binds syntaxins (569 aa)
     
 
  0.977
KEU
Keule; Regulator of vesicle trafficking involved in cytokinesis and root hair development, but not required for cell elongation (666 aa)
     
 
  0.969
ATSLY1
Member of SLY1 Gene Family; May be involved in the early secretory pathway (627 aa)
     
 
  0.959
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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