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AT1G12650 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G12650" - rRNA biogenesis RRP36-like protein in Arabidopsis thaliana
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
AT1G12650rRNA biogenesis RRP36-like protein; Unknown protein; Contains the following InterPro domains- Protein of unknown function DUF947 (InterPro-IPR009292); Has 700 Blast hits to 631 proteins in 192 species- Archae - 0; Bacteria - 32; Metazoa - 138; Fungi - 168; Plants - 60; Viruses - 0; Other Eukaryotes - 302 (source- NCBI BLink) (248 aa)    
Predicted Functional Partners:
NOF1
U3 small nucleolar RNA-associated protein; Its function is described as molecular_function unknown; Involved in biological_process unknown; Located in nucleus; Expressed in 24 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- Digestive organ expansion factor, predicted (InterPro-IPR010678); Has 25006 Blast hits to 13379 proteins in 904 species- Archae - 102; Bacteria - 5571; Metazoa - 7448; Fungi - 3168; Plants - 1056; Viruses - 466; Other Eukaryotes - 7195 (source- NCBI BLink) (754 aa)
     
  0.999
AT5G08420
RNA-binding KH domain-containing protein; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly (391 aa)
     
  0.999
AT4G28200
U3 small nucleolar RNA-associated-like protein; Its function is described as molecular_function unknown; Involved in RNA processing; Located in intracellular; Expressed in 22 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- RNA-processing protein, HAT helix (InterPro-IPR003107), U3 small nucleolar RNA-associated protein 6 (InterPro-IPR013949); Has 492 Blast hits to 480 proteins in 206 species- Archae - 0; Bacteria - 2; Metazoa - 128; Fungi - 191; Plants - 60; Viruses - 0; Other Eukaryotes - 111 (source- NCBI BLink) (648 aa)
     
  0.999
EMB2777
Sas10/U3 ribonucleoprotein (Utp) family protein; EMBRYO DEFECTIVE 2777 (EMB2777); Its function is described as molecular_function unknown; Involved in gene silencing; Located in nucleus; Expressed in 22 plant structures; Expressed during 12 growth stages; Contains the following InterPro domains- Sas10/Utp3/C1D (InterPro-IPR007146), Something about silencing protein 10 (Sas10), C-terminal (InterPro-IPR018972); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT3G28230.2); Has 14657 Blast hits to 10395 proteins in 729 species- Archae - 127; Bacteria - 2247; Metazoa - 474 [...] (654 aa)
     
  0.999
AT3G28230
Something about silencing protein; Its function is described as molecular_function unknown; Involved in gene silencing; Located in nucleus; Expressed in 15 plant structures; Expressed during 6 growth stages; Contains the following InterPro domains- Something about silencing protein 10 (Sas10), C-terminal (InterPro-IPR018972); BEST Arabidopsis thaliana protein match is- Sas10/U3 ribonucleoprotein (Utp) family protein (TAIR-AT2G43650.1); Has 30201 Blast hits to 17322 proteins in 780 species- Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eu [...] (174 aa)
     
  0.998
AT5G14050
U3 small nucleolar RNA-associated protein 18 homolog; Involved in nucleolar processing of pre-18S ribosomal RNA (546 aa)
     
  0.997
AT1G69070
Nucleolar-like protein; Its function is described as molecular_function unknown; Involved in biological_process unknown; Located in cellular_component unknown; Expressed in 23 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- Nop14-like protein (InterPro-IPR007276); Has 69842 Blast hits to 35213 proteins in 1572 species- Archae - 363; Bacteria - 20593; Metazoa - 20851; Fungi - 8010; Plants - 2912; Viruses - 517; Other Eukaryotes - 16596 (source- NCBI BLink) (901 aa)
     
 
  0.997
AT1G06720
P-loop containing nucleoside triphosphate hydrolases superfamily protein; Its function is described as GTP binding, GTPase activity; Involved in ribosome biogenesis; Located in nucleus; Expressed in 21 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- AARP2CN (InterPro-IPR012948), Protein synthesis factor, GTP-binding (InterPro-IPR000795), Protein of unknown function DUF663 (InterPro-IPR007034); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT1G42440.1); Has 8329 Blast hits to 5822 proteins in 470 species- Archae - 49; Bac [...] (1147 aa)
     
 
  0.997
YAO
Transducin/WD40 repeat-like superfamily protein; Component of a nucleolar small nuclear ribonucleoprotein particle (snoRNP) thought to participate in the processing and modification of pre-ribosomal RNA (By similarity). Essential for embryogenesis. Plays a critical role in embryo sac development and gametic cell fate. Required for the correct positioning of the first division plane of zygote. May function during early embryogenesis (504 aa)
     
  0.997
EMB2271
Transducin/WD40 repeat-like superfamily protein; Component of a nucleolar small nuclear ribonucleoprotein particle (snoRNP) thought to participate in the processing and modification of pre-ribosomal RNA (By similarity). Essential for embryogenesis (By similarity). May function during late embryogenesis (479 aa)
     
  0.997
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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