STRINGSTRING
AT1G12650 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G12650" - Uncharacterized protein in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G12650Uncharacterized protein (248 aa)    
Predicted Functional Partners:
EDA14
EMBRYO SAC DEVELOPMENT ARREST 14; Involved in nucleolar processing of pre-18S ribosomal RNA (228 aa)
     
 
    0.998
AT4G02400
U3 ribonucleoprotein-like protein (855 aa)
     
 
    0.991
AT5G08600
U3 ribonucleoprotein (Utp) family protein (845 aa)
     
 
    0.990
AT5G08420
RNA-binding KH domain-containing protein; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly (391 aa)
     
  0.988
AT1G02870
Uncharacterized protein (193 aa)
     
        0.986
AT1G23280
MAK16 protein-related (303 aa)
     
        0.981
AT3G22660
rRNA processing protein-related; Required for the processing of the 27S pre-rRNA (293 aa)
     
 
  0.977
AT2G40430
Uncharacterized protein (449 aa)
     
      0.974
AT5G38720
Uncharacterized protein (306 aa)
     
 
    0.974
AT4G28450
WD repeat and SOF domain-containing protein 1 (452 aa)
     
 
    0.972
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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