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AT1G12790 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G12790" - Protein PARTING DANCERS in Arabidopsis thaliana
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second shell of interactors
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proteins of unknown 3D structure
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some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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AT1G12790Protein PARTING DANCERS; Required for chromosome segregation during meiosis. During diakinesis and prometaphase I, essential for the formation of class I meiotic crossovers and homologous recombination; Belongs to the ERCC1/RAD10/SWI10 family (250 aa)    
Predicted Functional Partners:
PUM15
Pumilio homolog 15; Encodes a member of the Arabidopsis Pumilio (APUM) proteins containing PUF domain (eight repeats of approximately 36 amino acids each). PUF proteins regulate both mRNA stability and translation through sequence-specific binding to the 3’ UTR of target mRNA transcripts (477 aa)
           
  0.953
SHOC1
Protein SHORTAGE IN CHIASMATA 1; Encodes a protein with similarity to XPF endonucleases. Loss of function mutations have defects in meiosis- specifically a reduction in the number of chiasmata. As a result both pollen and embryo sacs are abnormal and plants have severely reduced fertility (1594 aa)
       
 
  0.896
AT1G12800
Nucleic acid-binding, OB-fold-like protein; Its function is described as RNA binding; Located in chloroplast; Expressed in 22 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- Nucleic acid-binding, OB-fold-like (InterPro-IPR016027), Nucleic acid-binding, OB-fold (InterPro-IPR012340), Ribosomal protein S1, RNA-binding domain (InterPro-IPR003029); BEST Arabidopsis thaliana protein match is- Nucleic acid-binding proteins superfamily (TAIR-AT3G23700.1); Has 17110 Blast hits to 8844 proteins in 2496 species- Archae - 8; Bacteria - 12066; Metazoa - [...] (767 aa)
           
  0.860
AT1G12760
Zinc finger, C3HC4 type (RING finger) family protein; Mediates E2-dependent protein ubiquitination in vitro (408 aa)
           
  0.838
RCK
ATP binding;ATP-dependent helicases;DNA helicases; DNA helicase required for crossover formation, complete synapsis of homologous chromosomes and bivalent formation during meiosis. Is specific to recombination events resulting in interference-sensitive crossovers (class I meiotic crossover) (1133 aa)
           
  0.780
AT3G26070
Plastid-lipid associated protein PAP / fibrillin family protein; Its function is described as structural molecule activity; Involved in biological_process unknown; Located in chloroplast thylakoid membrane, chloroplast, plastoglobule; Contains the following InterPro domains- Plastid lipid-associated protein/fibrillin (InterPro-IPR006843); BEST Arabidopsis thaliana protein match is- plastid-lipid associated protein PAP / fibrillin family protein (TAIR-AT3G26080.1); Has 483 Blast hits to 479 proteins in 86 species- Archae - 0; Bacteria - 99; Metazoa - 0; Fungi - 0; Plants - 334; Viruses [...] (242 aa)
           
  0.777
MSH4
DNA mismatch repair protein MSH4; Involved in meiotic recombination in association with MSH5. Required for reciprocal recombination and proper segregation of homologous chromosomes at meiosis. Promotes homologous recombination through facilitating chiasma formation during prophase I. Involved in the control of class I crossovers formation; Belongs to the DNA mismatch repair MutS family (792 aa)
           
  0.769
AtSPO22
Tetratricopeptide repeat (TPR)-like superfamily protein; Required for meiotic chromosome segregation. It is involved in interference-sensitive crossovers (class I meiotic crossover) formation, in both male and female meiosis. Is specific to recombination events resulting in interference-sensitive crossovers (class I meiotic crossover). Not required for synapsis completion (936 aa)
           
  0.699
MSH5
DNA mismatch repair protein MSH5; Encodes MSH5, a homologue of the MutS-homolog family of genes required for normal levels of recombination in budding yeast, mouse and Caenorhabditis elegans. Involved in meiotic recombination. Required for the formation of Class I interference-sensitive crossovers. Transcripts of AtMSH5 are specific to reproductive tissues and expression of the protein is abundant during prophase I of meiosis. Involved in meiotic recombination. Required for the formation of Class I interference-sensitive crossovers; Belongs to the DNA mismatch repair MutS family (807 aa)
           
  0.699
PMEAMT
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; Catalyzes N-methylation of phosphomonomethylethanolamine and phosphodimethylethanolamine, the two methylation steps required to convert phosphomonoethanolamine to phosphocholine. Unlike NMT1, NMT2 cannot utilize phosphoethanolamine as substrate in vitro; Belongs to the class I-like SAM-binding methyltransferase superfamily. PEAMT family (491 aa)
           
  0.646
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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