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AT1G12800 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G12800" - S1 RNA-binding domain-containing protein in Arabidopsis thaliana
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G12800S1 RNA-binding domain-containing protein (767 aa)    
Predicted Functional Partners:
PUM24
Pumilio 24; Sequence-specific RNA-binding protein that regulates translation and mRNA stability by binding the 3’-UTR of target mRNAs (641 aa)
     
 
  0.993
AT4G23540
ARM repeat superfamily protein (1131 aa)
     
 
  0.992
AT2G34357
ARM repeat superfamily protein (1280 aa)
     
 
  0.992
AT1G69070
Uncharacterized protein (901 aa)
     
 
  0.992
At3g55510
REBELOTE (594 aa)
     
 
  0.992
AT2G18220
Noc2p family (764 aa)
     
 
  0.992
AT2G40360
transducin/WD-40 repeat-containing protein; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit (753 aa)
     
 
  0.992
EDA25
Embryo sac development arrest 25 (1043 aa)
     
 
  0.992
AT3G57940
Uncharacterized protein; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)- acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires a tRNA-binding adapter protein for full tRNA acetyltransferase activity but not for 18S rRNA acetylation (1028 aa)
     
 
  0.991
AT1G10490
Uncharacterized protein; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)- acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires a tRNA-binding adapter protein for full tRNA acetyltransferase activity but not for 18S rRNA acetylation (1028 aa)
     
 
  0.991
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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