STRINGSTRING
AT1G12805 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G12805" - Nucleotide binding in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G12805Nucleotide binding (75 aa)    
Predicted Functional Partners:
AT4G10270
Wound-responsive family protein (90 aa)
     
        0.620
AT1G02260
Divalent ion symporter (502 aa)
           
  0.606
CASP5
UPF0497 membrane protein; Regulates membrane-cell wall junctions and localized cell wall deposition. Required for establishment of the Casparian strip membrane domain (CSD) and the subsequent formation of Casparian strips, a cell wall modification of the root endodermis that determines an apoplastic barrier between the intraorganismal apoplasm and the extraorganismal apoplasm and prevents lateral diffusion (187 aa)
           
  0.600
UBP23
Ubiquitin-specific protease 23; Recognizes and hydrolyzes the peptide bond at the C- terminal Gly of ubiquitin. Involved in the processing of poly- ubiquitin precursors as well as that of ubiquitinated proteins (By similarity) (859 aa)
           
  0.501
INDH
Iron-sulfur protein required for NADH dehydrogenase (313 aa)
           
  0.471
AT2G18360
Esterase/lipase domain-containing protein (313 aa)
           
  0.448
eEF-1Bb1
Elongation factor 1-delta 1; EF-1-beta and EF-1-delta stimulate the exchange of GDP bound to EF-1-alpha to GTP (260 aa)
     
   
  0.445
FLDH
Farnesol dehydrogenase (344 aa)
           
  0.443
ORF107G
Hypothetical protein.[Source-TAIR;Acc-ATMG01060] (107 aa)
           
  0.428
HINT4
Histidine triad nucleotide-binding 4 (146 aa)
           
  0.426
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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