Groups of genes that are frequently observed in each other's genomic neighborhood.
Known metabolic pathways, protein complexes, signal transduction pathways, etc ... from curated databases.
Genes that are sometimes fused into single open reading frames.
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Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
colored nodes: query proteins and first shell of interactors
white nodes: second shell of interactors
empty nodes: proteins of unknown 3D structure
filled nodes: some 3D structure is known or predicted
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
from curated databases
Galacturonosyltransferase-like 3; May be involved in pectin and/or xylans biosynthesis in cell walls (345 aa)
Predicted Functional Partners:
Aspartyl protease family protein (452 aa)
Uncharacterized protein (293 aa)
Transmembrane Fragile-X-F-associated protein (466 aa)
Family of unknown function (DUF572) (310 aa)
Putative defensin-like protein 148 (81 aa)
La related protein 1a; Required for acclimation and survival during thermal stress. Heat-specific cofactor of XRN4 required for its targeting to polysomes and subsequent rapid degradation of seedling transcriptome during the early steps of the heat stress response (833 aa)
Uncharacterized protein (347 aa)
Exostosin family protein (425 aa)
Hydroxyproline-rich glycoprotein family protein (219 aa)
Proline-rich receptor-like protein kinase (388 aa)
Your Current Organism:
NCBI taxonomy Id: 3702 Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress