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STRINGSTRING
AT1G13340 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G13340" - Regulator of Vps4 activity in the MVB pathway protein in Arabidopsis thaliana
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Score
AT1G13340Regulator of Vps4 activity in the MVB pathway protein; Contains the following InterPro domains- Protein of unknown function DUF292, eukaryotic (InterPro-IPR005061); BEST Arabidopsis thaliana protein match is- Regulator of Vps4 activity in the MVB pathway protein (TAIR-AT1G34220.2); Has 628 Blast hits to 628 proteins in 152 species- Archae - 0; Bacteria - 0; Metazoa - 164; Fungi - 130; Plants - 284; Viruses - 0; Other Eukaryotes - 50 (source- NCBI BLink) (409 aa)    
Predicted Functional Partners:
TUB9
Tubulin beta-9 chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain (444 aa)
          
  0.918
AtCDC48B
Cell division control protein 48 homolog D; Probably functions in cell division and growth processes. Interacts with certain SNAREs as part of specialized membrane fusion events where vesicles from the same organelle fuse (homotypic fusion) (By similarity) (815 aa)
      
    0.911
AT2G19710
Regulator of Vps4 activity in the MVB pathway protein; Involved in biological_process unknown; Expressed in 24 plant structures; Expressed during 15 growth stages; Contains the following InterPro domains- Protein of unknown function DUF292, eukaryotic (InterPro-IPR005061); BEST Arabidopsis thaliana protein match is- Regulator of Vps4 activity in the MVB pathway protein (TAIR-AT4G29440.1); Has 35333 Blast hits to 34131 proteins in 2444 species- Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source- NCBI BLink) (937 aa)
      
 
 
0.908
AT3G10300
Calcium-binding EF-hand family protein; Potential calcium sensor (335 aa)
      
 
  0.907
AT2G26390
Serine protease inhibitor (SERPIN) family protein; Probable serine protease inhibitor (389 aa)
      
 
    0.906
AT5G04170
Calcium-binding EF-hand family protein; Potential calcium sensor (354 aa)
      
 
  0.905
GDI
GDP dissociation inhibitor family protein / Rab GTPase activator family protein; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP (445 aa)
      
 
    0.904
GDI2
Guanosine nucleotide diphosphate dissociation inhibitor 2; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP (444 aa)
      
 
    0.904
GDI1
Guanosine nucleotide diphosphate dissociation inhibitor 1; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family (445 aa)
      
 
    0.904
CDC48
Encodes a cell division cycle protein, a member of AAA-type ATPases gene family. Expressed throughout the plant in regions of cell division. Within the cell, sub-cellular localization varies depending on the stage of the cell cycle.Mutants in which the expression of CDC48A is altered show defects in cytokinesis, cell expansion and cell differentiation (809 aa)
      
    0.902
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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