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AT1G13350 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G13350" - Protein kinase superfamily protein in Arabidopsis thaliana
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query proteins and first shell of interactors
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second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
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textmining
co-expression
protein homology
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AT1G13350Protein kinase superfamily protein; Its function is described as protein serine/threonine kinase activity, protein kinase activity, ATP binding; Involved in protein amino acid phosphorylation; Located in nucleus, cytoplasm; Expressed in male gametophyte, pollen tube; Expressed during L mature pollen stage, M germinated pollen stage; Contains the following InterPro domains- Protein kinase, catalytic domain (InterPro-IPR000719), Serine/threonine-protein kinase domain (InterPro-IPR002290), Tyrosine-protein kinase, catalytic domain (InterPro-IPR020635), Serine/threonine-protein kinase-like [...] (788 aa)    
Predicted Functional Partners:
AT1G15200
Protein-protein interaction regulator family protein; Its function is described as molecular_function unknown; Involved in biological_process unknown; Located in cellular_component unknown; Expressed in 22 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- Pinin/SDK/memA protein (InterPro-IPR006786) (470 aa)
     
 
  0.939
AT5G25230
Ribosomal protein S5/Elongation factor G/III/V family protein; Splicing factor involved in pre-mRNA splicing and component of the spliceosome (973 aa)
     
 
  0.888
MEE5
Ribosomal protein S5/Elongation factor G/III/V family protein; Splicing factor involved in pre-mRNA splicing and component of the spliceosome. Essential for reproduction. In female gametophyte, is necessary for the egg cell and central cell fate determination and hence reproductive success. Involved in a mechanism that prevents accessory cells from adopting gametic cell fate. Is necessary to restrict LIS expression to interfere with egg-cell specification. Probable component of U5 small nuclear ribonucleoprotein (snRNP) that is required for pre-mRNA splicing. Plays an essential role in [...] (987 aa)
     
 
  0.888
AT1G60200
Splicing factor PWI domain-containing protein / RNA recognition motif (RRM)-containing protein; Its function is described as nucleotide binding, nucleic acid binding; Involved in mRNA processing; Located in chloroplast; Expressed in 24 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- RNA recognition motif, RNP-1 (InterPro-IPR000504), Nucleotide-binding, alpha-beta plait (InterPro-IPR012677), Splicing factor PWI (InterPro-IPR002483); Has 135188 Blast hits to 78111 proteins in 2910 species- Archae - 381; Bacteria - 16050; Metazoa - 59921; Fung [...] (899 aa)
     
   
  0.880
AT5G64270
Splicing factor, putative; Its function is described as binding; Involved in mRNA processing; Located in chloroplast; Expressed in 26 plant structures; Expressed during 15 growth stages; Contains the following InterPro domains- HEAT (InterPro-IPR000357), Armadillo-like helical (InterPro-IPR011989), Splicing factor 3B subunit 1 (InterPro-IPR015016), HEAT, type 2 (InterPro-IPR021133), Armadillo-type fold (InterPro-IPR016024); Has 1807 Blast hits to 1807 proteins in 277 species- Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source [...] (1269 aa)
     
      0.803
PRP40C
Pre-mRNA-processing protein 40C; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. I [...] (835 aa)
     
        0.788
ATSRL1
Pre-mRNA splicing factor SR-like 1; Encodes a putative splicing factor. Over-expression in yeast and Arabidopsis result in increased tolerance to high salt (393 aa)
     
      0.788
AT2G02160
CCCH-type zinc finger family protein; Its function is described as zinc ion binding, nucleic acid binding; Involved in biological_process unknown; Located in cellular_component unknown; Expressed in 24 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- Zinc finger, CCCH-type (InterPro-IPR000571); Has 10885 Blast hits to 7444 proteins in 511 species- Archae - 23; Bacteria - 415; Metazoa - 5228; Fungi - 922; Plants - 581; Viruses - 184; Other Eukaryotes - 3532 (source- NCBI BLink) (669 aa)
     
        0.779
EFS
Histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific); Histone methyltransferase involved in di and tri- methylation of ’Lys-36’ of histone H3 (H3K36me2 and H3K36me3). Binds to H3 already mono- or di-methylated on ’Lys-4’(H3K4me1 or H3K4me2), but not to H3K4me3. H3K4me and H3K36me represent specific tags for epigenetic transcriptional activation. Regulates positively FLC transcription to prevent early flowering transition. Required for flowering transition in response to vernalization and for the maintenance of FLC expression in late embryos, but dispen [...] (1805 aa)
     
 
  0.770
ASHH1
Histone-lysine N-methyltransferase ASHH1; Histone methyltransferase involved in regulation of flowering time. Required for the expression of the SOC1/AGL20 gene. Required for histone H3 trimethylation on ’Lys-4’ (H3K4me3) at the SOC1 locus. Prevents trimethylation on ’Lys-27’ (H3K27me3) at the same locus; Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. SET2 subfamily (492 aa)
     
 
  0.770
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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