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AT1G13880 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G13880" - Uncharacterized protein At1g13880 in Arabidopsis thaliana
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query proteins and first shell of interactors
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second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
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textmining
co-expression
protein homology
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AT1G13880Uncharacterized protein At1g13880; ELM2 domain-containing protein; Its function is described as DNA binding; Involved in biological_process unknown; Expressed in 24 plant structures; Expressed during 15 growth stages; Contains the following InterPro domains- SANT, DNA-binding (InterPro-IPR001005), ELM2 (InterPro-IPR000949); BEST Arabidopsis thaliana protein match is- ELM2 domain-containing protein (TAIR-AT2G03470.2); Has 146 Blast hits to 146 proteins in 14 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 145; Viruses - 0; Other Eukaryotes - 1 (source- NCBI BLink) (424 aa)    
Predicted Functional Partners:
AT5G06180
Protein of unknown function (DUF1022); Contains the following InterPro domains- Protein of unknown function DUF1022 (InterPro-IPR009367); BEST Arabidopsis thaliana protein match is- Protein of unknown function (DUF1022) (TAIR-AT5G22350.1); Has 30201 Blast hits to 17322 proteins in 780 species- Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source- NCBI BLink) (404 aa)
           
  0.952
ELM1
Protein of unknown function (DUF1022); Plant-specific factor involved in mitochondria fission. Is required for the correct localization of DRP3A from the cytosol to mitochondrial fission sites. Does not seem to be required for peroxisomal division (427 aa)
           
  0.779
DRP3A
Dynamin-related protein 3A; Encodes a protein with high sequence similarity to the dynamin superfamily. Among those members ADL2 was most closely related to Dnm1p of yeast and likely a member of the Vps1p subfamily. Widely expressed in various tissues with highest expression in flower tissues. Localizes to the chloroplast, mitochondrion and peroxisome. Involved in peroxisome and mitochondria fission in combination with DRP3B (809 aa)
           
  0.669
AT4G03100
Rho GTPase activating protein with PAK-box/P21-Rho-binding domain; Acts as a GTPase activator for the Rac-type GTPase by converting it to an inactive GDP-bound state (430 aa)
           
  0.662
HCF101
Fe-S cluster assembly factor HCF101, chloroplastic; Required for photosystem I (PSI) biosynthesis and assembly. May serve as a chloroplast scaffold protein that specifically assembles iron-sulfur (4Fe-4S) clusters and transfers them to the chloroplast PSI and ferredoxin-thioredoxin (FTR) complexes. Can assemble a 4Fe-4S cluster and transfer it to apoproteins in yeast cells. Probably not required for assembly or stability of plastidic 2Fe-2S clusters (532 aa)
           
  0.643
HDA08
Histone deacetylase 8; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes (By similarity) (377 aa)
           
  0.625
AT4G16500
Cystatin/monellin superfamily protein; Specific inhibitor of cysteine proteinases. Probably involved in the regulation of endogenous processes and in defense against pests and pathogens (By similarity) (117 aa)
           
  0.619
DRP3B
Dynamin-related protein 3B; Encodes a dynamin related protein. DRPs are self-assembling GTPasse involved in fission and fusion of membranes. DRP3B functions in mitochondrion and peroxisome fission in combination with DRP3A; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family (809 aa)
           
  0.580
DUO1
Myb-like HTH transcriptional regulator family protein; Transcription activator that acts as a positive regulator of male germline development by promoting both gametic cell specification and cell cycle progression. Binds to canonical MYB sites 5’-AACCGTC-3’, 5’-AAACCGC-3’ and 5’-AACCGT-3’ in promoters to trigger the expression of male germline-specific or enriched genes (e.g. MGH3, GEX2 and GCS1), including those required for fertilization. Required for sperm cell specification leading to pollen maturation by activating a germline-specific regulon. Involved in pollen mitosis entry at G [...] (297 aa)
           
  0.569
UBP27
Ubiquitin carboxyl-terminal hydrolase 27; Recognizes and hydrolyzes the peptide bond at the C- terminal Gly of ubiquitin. Involved in the processing of poly- ubiquitin precursors as well as that of ubiquitinated proteins (By similarity); Belongs to the peptidase C19 family (505 aa)
           
  0.568
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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