STRINGSTRING
AT1G13940 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G13940" - Uncharacterized protein in Arabidopsis thaliana
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
AT1G13940Uncharacterized protein (1005 aa)    
Predicted Functional Partners:
HEB1
ARM repeat superfamily protein (1203 aa)
     
        0.452
SDG25
SET domain protein 25; Histone methyltransferase involved in regulation of flowering time. Required for the expression of the flowering repressors FLC and MADS-box genes of the MAF family (PubMed-19726574, PubMed-19855050). Required for histone H3 dimethylation on ’Lys-36’ H3K36me2 at the FLC locus (PubMed-19726574). Required for histone H3 trimethylation on ’Lys- 4’ H3K4me3 at the FLC locus. Prevents trimethylation on ’Lys-27’ H3K276me3 at the same locus (PubMed-19855050). Involved in the control of seed dormancy and germination (PubMed-21799800) (1423 aa)
     
        0.436
AT5G24350
Uncharacterized protein; Required for proper maturation of seed storage proteins. Forms a complex with MAG2, ZW10/MIP1 and MIP3 on the endoplasmic reticulum that may be responsible for efficient transport of seed storage proteins (2396 aa)
     
        0.435
AT5G12350
Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (1075 aa)
     
        0.435
LDL3
LSD1-like 3; Probable histone demethylase that reduces the levels of histone H3 ’Lys-4’ methylation in chromatin (1628 aa)
     
        0.435
AT3G52250
Duplicated SANT DNA-binding domain-containing protein (1656 aa)
     
        0.435
AT3G47890
Ubiquitin carboxyl-terminal hydrolase-related protein (1568 aa)
     
        0.435
AT3G06670
Binding (886 aa)
     
        0.435
HUB1
Histone mono-ubiquitination 1; E3 ubiquitin-protein ligase that monoubiquitinates H2B to form H2BK143ub1. H2BK143ub1 gives a specific tag for epigenetic transcriptional activation and is also prerequisite for H3K4me and maybe H3K79me. It thereby plays a central role in histone code and gene regulation. Forms a ubiquitin ligase complex in cooperation with the E2 enzyme UBC2/RAD6. Required for the regulation of flowering time and defense against necrotrophic fungal pathogens (PubMed-12535538, PubMed-17329565, PubMed-17329563, PubMed-19286969). Involved in the control of seed dormancy and [...] (878 aa)
     
        0.435
AT2G38950
Transcription factor jumonji and C5HC2 type zinc finger domain-containing protein (708 aa)
     
        0.435
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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