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AT1G14060 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G14060" - Uncharacterized protein At1g14060/At1g14050 in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Cooccurence
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[Homology]
Score
AT1G14060Uncharacterized protein At1g14060/At1g14050; GCK domain-containing protein; Its function is described as molecular_function unknown; Involved in N-terminal protein myristoylation; Located in cellular_component unknown; Expressed in 16 plant structures; Expressed during 10 growth stages; Contains the following InterPro domains- GCK (InterPro-IPR012891); BEST Arabidopsis thaliana protein match is- GCK domain-containing protein (TAIR-AT5G02210.1); Has 325 Blast hits to 285 proteins in 75 species- Archae - 0; Bacteria - 2; Metazoa - 95; Fungi - 33; Plants - 117; Viruses - 2; Other Eukaryot [...] (179 aa)    
Predicted Functional Partners:
AT2G19385
Zinc ion binding; Its function is described as zinc ion binding; Involved in biological_process unknown; Located in intracellular; Expressed in 22 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- Zinc finger, C2H2-like (InterPro-IPR015880), Zinc finger, C2H2, LYAR-type (InterPro-IPR014898); BEST Arabidopsis thaliana protein match is- RNA recognition motif (RRM)-containing protein (TAIR-AT2G19380.1); Has 578 Blast hits to 525 proteins in 182 species- Archae - 0; Bacteria - 8; Metazoa - 240; Fungi - 111; Plants - 79; Viruses - 0; Other Eukaryo [...] (275 aa)
     
        0.432
AT5G02050
Mitochondrial glycoprotein family protein; Involved in biological_process unknown; Located in chloroplast, mitochondrial matrix; Expressed in 23 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- Mitochondrial glycoprotein (InterPro-IPR003428); BEST Arabidopsis thaliana protein match is- Mitochondrial glycoprotein family protein (TAIR-AT3G55605.1); Has 498 Blast hits to 497 proteins in 162 species- Archae - 0; Bacteria - 2; Metazoa - 46; Fungi - 134; Plants - 219; Viruses - 0; Other Eukaryotes - 97 (source- NCBI BLink) (267 aa)
     
        0.414
AT1G52930
Ribosomal RNA processing Brix domain protein; Involved in pre-rRNA processing and required for biogenesis of the large (60S) ribosomal subunit. Required for proper development; Belongs to the BRX1 family (320 aa)
     
        0.410
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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