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AT1G14170 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G14170" - RNA-binding KH domain-containing protein in Arabidopsis thaliana
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G14170RNA-binding KH domain-containing protein (479 aa)    
Predicted Functional Partners:
MYB102
MYB-like 102 (350 aa)
           
  0.491
IMP4
Ribosomal RNA processing Brix domain protein (294 aa)
       
      0.489
CBF4
C-repeat-binding factor 4; Transcriptional activator that binds specifically to the DNA sequence 5’-[AG]CCGAC-3’. Binding to the C-repeat/DRE element mediates abscisic acid- and dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation (224 aa)
           
  0.420
EEL
ENHANCED EM LEVEL; Binds to the embryo specification element and the ABA- responsive element (ABRE) of the Dc3 gene promoter and to the ABRE of the Em1 gene promoter. Could participate in abscisic acid- regulated gene expression during seed development (262 aa)
           
  0.420
CID4
CTC-interacting domain 4 (595 aa)
     
 
  0.415
CID3
CTC-interacting domain 3 (587 aa)
     
 
  0.415
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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