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AT1G14220 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G14220" - Ribonuclease T2 family protein in Arabidopsis thaliana
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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AT1G14220Ribonuclease T2 family protein; Its function is described as ribonuclease T2 activity, endoribonuclease activity, RNA binding; Involved in N-terminal protein myristoylation; Located in endomembrane system; Expressed in sperm cell, root, egg cell; Contains the following InterPro domains- Ribonuclease T2 (InterPro-IPR001568), Ribonuclease T2, active site (InterPro-IPR018188); BEST Arabidopsis thaliana protein match is- ribonuclease 3 (TAIR-AT1G26820.1); Has 2564 Blast hits to 2563 proteins in 502 species- Archae - 0; Bacteria - 420; Metazoa - 283; Fungi - 235; Plants - 1517; Viruses - 7; [...] (228 aa)    
Predicted Functional Partners:
AT3G12860
NOP56-like pre RNA processing ribonucleoprotein; Contains the following InterPro domains- Pre-mRNA processing ribonucleoprotein, snoRNA-binding domain (InterPro-IPR002687), NOP5, N-terminal (InterPro-IPR012974), NOSIC (InterPro-IPR012976); BEST Arabidopsis thaliana protein match is- homolog of nucleolar protein NOP56 (TAIR-AT1G56110.1); Has 9295 Blast hits to 5418 proteins in 524 species- Archae - 248; Bacteria - 207; Metazoa - 3152; Fungi - 1154; Plants - 664; Viruses - 16; Other Eukaryotes - 3854 (source- NCBI BLink) (499 aa)
           
  0.840
sks15
Pectinesterase like protein; SKU5 similar 15 (sks15); Its function is described as oxidoreductase activity, copper ion binding; Involved in oxidation reduction; Located in endomembrane system; Expressed in root; Contains the following InterPro domains- Multicopper oxidase, type 3 (InterPro-IPR011707), Cupredoxin (InterPro-IPR008972), Multicopper oxidase, type 2 (InterPro-IPR011706), Multicopper oxidase, type 1 (InterPro-IPR001117); BEST Arabidopsis thaliana protein match is- SKU5 similar 16 (TAIR-AT2G23630.1); Has 5537 Blast hits to 5515 proteins in 1034 species- Archae - 14; Bacteri [...] (541 aa)
     
   
  0.835
AT5G27120
NOP56-like pre RNA processing ribonucleoprotein; SAR DNA-binding protein, putative, strong similarity to SAR DNA-binding protein-1 (Pisum sativum) GI-3132696; contains Pfam profile PF01798- Putative snoRNA binding domain; has similarity to MAR binding NOP58 protein (533 aa)
           
  0.831
sks10
Multi-copper oxidase type I family protein; SKU5 similar 10 (sks10); Its function is described as oxidoreductase activity, copper ion binding; Involved in oxidation reduction; Located in endomembrane system; Expressed in petal, leaf whorl, sepal, flower; Expressed during 4 anthesis, petal differentiation and expansion stage; Contains the following InterPro domains- Multicopper oxidase, type 3 (InterPro-IPR011707), Cupredoxin (InterPro-IPR008972), Multicopper oxidase, type 2 (InterPro-IPR011706), Multicopper oxidase, type 1 (InterPro-IPR001117); BEST Arabidopsis thaliana protein match [...] (547 aa)
           
  0.811
AT3G05060
NOP56-like pre RNA processing ribonucleoprotein; SAR DNA-binding protein, putative, strong similarity to SAR DNA-binding protein-1 (Pisum sativum) GI-3132696; contains Pfam profile PF01798- Putative snoRNA binding domain; encodes NOP58-like protein (533 aa)
           
  0.780
AT5G27140
NOP56-like pre RNA processing ribonucleoprotein; Required for 60S ribosomal subunit biogenesis (445 aa)
           
  0.772
U2A
U2 small nuclear ribonucleoprotein A; This protein is associated with sn-RNP U2. It helps the A’ protein to bind stem loop IV of U2 snRNA (By similarity) (249 aa)
           
  0.763
AT5G07340
Calreticulin family protein; Calcium-binding protein that interacts with newly synthesized glycoproteins in the endoplasmic reticulum. It may act in assisting protein assembly and/or in the retention within the ER of unassembled protein subunits. It seems to play a major role in the quality control apparatus of the ER by the retention of incorrectly folded proteins (By similarity) (540 aa)
           
  0.734
emb1027
Arginine--tRNA ligase, chloroplastic/mitochondrial; Forms part of a macromolecular complex that catalyzes the attachment of specific amino acids to cognate tRNAs during protein synthesis; Belongs to the class-I aminoacyl-tRNA synthetase family (642 aa)
           
  0.710
AT1G66530
Arginine--tRNA ligase, cytoplasmic; Forms part of a macromolecular complex that catalyzes the attachment of specific amino acids to cognate tRNAs during protein synthesis; Belongs to the class-I aminoacyl-tRNA synthetase family (590 aa)
           
  0.699
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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