STRINGSTRING
AT1G14330 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G14330" - F-box/kelch-repeat protein SKIP11 in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G14330F-box/kelch-repeat protein SKIP11 (441 aa)    
Predicted Functional Partners:
AT4G39750
F-box-related protein (146 aa)
           
  0.701
AT5G19150
pfkB-like carbohydrate kinase family protein; Catalyzes the dehydration of the S-form of NAD(P)HX at the expense of ATP, which is converted to ADP. Together with NAD(P)HX epimerase, which catalyzes the epimerization of the S- and R-forms, the enzyme allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration (365 aa)
           
  0.677
AT1G48190
Galactose oxidase/kelch repeat superfamily protein (127 aa)
           
  0.674
AT5G42350
F-box/kelch-repeat protein (563 aa)
           
  0.670
AT5G38510
Rhomboid-related intramembrane serine protease-like protein; Probable rhomboid-type serine protease that catalyzes intramembrane proteolysis (434 aa)
           
  0.670
AT2G03460
Galactose oxidase/kelch-like protein (257 aa)
           
  0.670
AT5G25560
CHY and CTCHY and RING-type zinc finger protein (328 aa)
     
   
  0.613
AT3G06620
PAS domain-containing tyrosine kinase-like protein (773 aa)
           
  0.558
VOZ1
Vascular plant one zinc finger protein; Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down- regulates ’FLOWERING LOCUS C’ (FLC) and up-regulates ’FLOWERING LOCUS T’ (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner (486 aa)
           
  0.551
VFB1
VIER F-box protein 1 (518 aa)
     
   
  0.527
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
Server load: low (19%) [HD]