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IQD28 protein (Arabidopsis thaliana) - STRING interaction network
"IQD28" - IQ-domain 28 in Arabidopsis thaliana
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
IQD28IQ-domain 28 (664 aa)    
Predicted Functional Partners:
SmD3
snRNP core protein SMD3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome (By similarity). May play a minor role in the splicing of cellular pre-mRNAs (PubMed-21421416) (128 aa)
           
  0.673
UBA2A
UBP1-associated protein 2A; Heterogeneous nuclear ribonucleoprotein (hnRNP)-like protein that acts as component of a complex regulating the turnover of mRNAs in the nucleus. Binds with high affinity to RNA molecules that contain U-rich sequences in 3’-UTRs. May function in complex with UBP1 and contribute to the stabilization of mRNAs in the nucleus. However, unlike UBP1, UBA2A does not stimulate pre-mRNA splicing (478 aa)
           
  0.636
AT1G13030
Coilin; Probable component of nuclear coiled bodies, also known as Cajal bodies or CBs, which are involved in the modification and assembly of nucleoplasmic snRNPs (Probable). Required for CBs formation (PubMed-16624863). Binds snRNAs and non-specific artificial RNA via the N-terminal part of the NOD domain and via the NLS2 region (212-282) of the IDD domain (PubMed-23320094). The two sites are able to function independently and provide effective RNA-binding in a non-cooperative manner (PubMed-23320094) (608 aa)
           
  0.633
SAD2
Importin 7-like protein URM9; Functions probably in nuclear protein import, either by acting as autonomous nuclear transport receptor or as an adapter- like protein in association with other importin subunits (Probable). Involved in the regulation of the abscisic acid (ABA)- mediated pathway in response to cold or salt stress (PubMed-16889648). Involved in UV-B responses by regulating accumulation of UV-absorbing pigments through mediation of MYB4 nuclear transport (PubMed-17993626). Involved in trichome initiation by controlling GL1, GL2, GL3 and TTG1 transcription and may affect an u [...] (1040 aa)
           
  0.603
CBP20
CAP-binding protein 20; Component of the cap-binding complex (CBC), which binds co-transcriptionally to the 5’ cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing and RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs). The CBC complex is involved in miRNA-mediated RNA interference and is required for primary miRNA processing. In the CBC complex, CBP20 recognizes and binds capped RNAs (m7GpppG-capped RNA) but requires ABH1/CBP80 to stabilize the movement of its N-terminal loop and lock the CBC into a high affinity cap-binding state with the cap structur [...] (257 aa)
           
  0.446
ARF17
Auxin response factor 17; Auxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5’-TGTCTC-3’ found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression (585 aa)
     
   
  0.419
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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