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AT1G14640 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G14640" - SWAP in Arabidopsis thaliana
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
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textmining
co-expression
protein homology
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AT1G14640SWAP (Suppressor-of-White-APricot)/surp domain-containing protein; Its function is described as RNA binding; Involved in RNA processing; Expressed in male gametophyte, flower, seed, pollen tube; Expressed during L mature pollen stage, M germinated pollen stage, 4 anthesis, E expanded cotyledon stage; Contains the following InterPro domains- SWAP/Surp (InterPro-IPR000061), Pre-mRNA splicing factor PRP21 like protein (InterPro-IPR022030); BEST Arabidopsis thaliana protein match is- SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein (TAIR-AT1G1465 [...] (735 aa)    
Predicted Functional Partners:
AT5G64270
Splicing factor, putative; Its function is described as binding; Involved in mRNA processing; Located in chloroplast; Expressed in 26 plant structures; Expressed during 15 growth stages; Contains the following InterPro domains- HEAT (InterPro-IPR000357), Armadillo-like helical (InterPro-IPR011989), Splicing factor 3B subunit 1 (InterPro-IPR015016), HEAT, type 2 (InterPro-IPR021133), Armadillo-type fold (InterPro-IPR016024); Has 1807 Blast hits to 1807 proteins in 277 species- Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source [...] (1269 aa)
     
  0.995
ATO
Splicing factor SF3a60 homolog; Encodes a protein with similarity to pre-mRNA splicing factor SF3a60 that is involved in gametic cell fate determination. Loss of function results in the ectopic expression of egg cell makers suggesting a role in restriction of gametic cell fate. Expressed strongly in gametophytes and weakly in sporophytes; Belongs to the SF3A3 family (504 aa)
     
  0.994
CDC5
Cell division cycle 5-like protein; Component of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. Possesses a sequence specific DNA sequence ’CTCAGCG’ binding activity. Involved in mRNA splicing and cell cycle control. May also play a role in the response to DNA damage; Belongs to the CEF1 family (844 aa)
     
  0.993
AT4G21660
Proline-rich spliceosome-associated (PSP) family protein; Involved in mRNA processing; Located in nucleus, chloroplast; Contains the following InterPro domains- PSP, proline-rich (InterPro-IPR006568), Protein of unknown function DUF382 (InterPro-IPR007180); BEST Arabidopsis thaliana protein match is- pliceosome associated protein-related (TAIR-AT1G11520.1) (598 aa)
     
  0.992
AT2G32600
Hydroxyproline-rich glycoprotein family protein; Its function is described as zinc ion binding, nucleic acid binding; Involved in biological_process unknown; Located in nucleus, intracellular, spliceosomal complex; Expressed in 22 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- Zinc finger, C2H2-like (InterPro-IPR015880), Zinc finger, U1-type (InterPro-IPR003604), Zinc finger, C2H2-type matrin (InterPro-IPR000690); Has 18078 Blast hits to 8181 proteins in 576 species- Archae - 26; Bacteria - 1885; Metazoa - 7255; Fungi - 1800; Plants - 3678 [...] (277 aa)
     
  0.990
U2A
U2 small nuclear ribonucleoprotein A; This protein is associated with sn-RNP U2. It helps the A’ protein to bind stem loop IV of U2 snRNA (By similarity) (249 aa)
     
  0.985
emb2444
RNA-binding (RRM/RBD/RNP motifs) family protein; Embryo defective 2444 (emb2444); Its function is described as RNA binding, nucleotide binding, nucleic acid binding; Involved in embryo development ending in seed dormancy; Located in nucleolus; Expressed in 23 plant structures; Expressed during 14 growth stages; Contains the following InterPro domains- RNA recognition motif, RNP-1 (InterPro-IPR000504), Nucleotide-binding, alpha-beta plait (InterPro-IPR012677); BEST Arabidopsis thaliana protein match is- poly(A) binding protein 8 (TAIR-AT1G49760.2); Has 66829 Blast hits to 41224 proteins [...] (363 aa)
     
  0.982
SAP130b
Cleavage and polyadenylation specificity factor (CPSF) A subunit protein; Subunit of the splicing factor SF3B required for ’A’ complex assembly formed by the stable binding of U2 snRNP to the branchpoint sequence (BPS) in pre-mRNA. Sequence independent binding of SF3A/SF3B complex upstream of the branch site is essential, it may anchor U2 snRNP to the pre-mRNA. May also be involved in the assembly of the ’E’ complex. Belongs also to the minor U12-dependent spliceosome, which is involved in the splicing of rare class of nuclear pre-mRNA intron (By similarity). Required for pollen and ov [...] (1214 aa)
     
  0.981
AT4G38780
Pre-mRNA-processing-splicing factor 8B; Functions as a scaffold that mediates the ordered assembly of spliceosomal proteins and snRNAs. Required for the assembly of the U4/U6-U5 tri-snRNP complex (2332 aa)
     
  0.980
EMB14
Pre-mRNA-processing-splicing factor 8A; Functions as a scaffold that mediates the ordered assembly of spliceosomal proteins and snRNAs. Required for the assembly of the U4/U6-U5 tri-snRNP complex (By similarity). Required for embryo development (Ref.3). Required for splicing efficiency of COOLAIR introns and usage of the proximal poly(A) site. COOLAIR is a set of long non-coding antisense transcripts produced at the FLOWERING LOCUS C (FLC). COOLAIR initiates just downstream of the major sense transcript poly(A) site and terminates either early or extends into the FLC promoter region. S [...] (2359 aa)
     
  0.980
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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