• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
AT1G14670 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G14670" - Endomembrane protein 70 protein family in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G14670Endomembrane protein 70 protein family; Involved in transport; Located in integral to membrane, Golgi apparatus, membrane; Expressed in 22 plant structures; Expressed during 14 growth stages; Contains the following InterPro domains- Nonaspanin (TM9SF) (InterPro-IPR004240); BEST Arabidopsis thaliana protein match is- Endomembrane protein 70 protein family (TAIR-AT2G01970.1); Has 1574 Blast hits to 1525 proteins in 319 species- Archae - 0; Bacteria - 2; Metazoa - 610; Fungi - 249; Plants - 451; Viruses - 0; Other Eukaryotes - 262 (source- NCBI BLink) (592 aa)    
Predicted Functional Partners:
RER1
Protein RETICULATA-RELATED 1, chloroplastic; May play a role in leaf development; Belongs to the RETICULATA family (433 aa)
           
  0.792
AT1G61670
Lung seven transmembrane receptor family protein; Its function is described as molecular_function unknown; Located in endomembrane system, integral to membrane; Contains the following InterPro domains- Transmembrane receptor, eukaryota (InterPro-IPR009637); BEST Arabidopsis thaliana protein match is- Lung seven transmembrane receptor family protein (TAIR-AT1G10980.1); Has 653 Blast hits to 651 proteins in 175 species- Archae - 0; Bacteria - 2; Metazoa - 278; Fungi - 148; Plants - 158; Viruses - 0; Other Eukaryotes - 67 (source- NCBI BLink) (513 aa)
     
   
  0.734
AT5G19740
Probable glutamate carboxypeptidase LAMP1; Acts in association with AMP1 to suppress ectopic stem cell niche formation in the shoot apical meristem (SAM) indenpendently of cytokinin signaling pathway; Belongs to the peptidase M28 family. M28B subfamily (681 aa)
       
 
  0.693
VSR2
VACUOLAR SORTING RECEPTOR 2; Vacuolar-sorting receptor (VSR) involved in clathrin- coated vesicles sorting from Golgi apparatus to vacuoles (641 aa)
           
  0.664
VSR4
Vacuolar-sorting receptor 4; Vacuolar-sorting receptor (VSR) involved in clathrin- coated vesicles sorting from Golgi apparatus to vacuoles; Belongs to the VSR (BP-80) family (628 aa)
           
  0.619
AT5G06360
Ribosomal protein S8e family protein; Contains the following InterPro domains- Ribosomal protein S8e/ribosomal biogenesis NSA2= (InterPro-IPR022309); Has 1807 Blast hits to 1807 proteins in 277 species- Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source- NCBI BLink) (260 aa)
           
  0.580
RBX1
Encodes a ring-box 1 like protein and component of the SCF ubiquitinization complex mediating auxin responses. Forms a E3 ubiquitin ligase complex with CUL3A and At1g21780.1 a BTB domain protein (142 aa)
     
      0.543
AT3G42830
RING/U-box superfamily protein; Component of the SCF (SKP1-CUL1-F-box protein) E3 ubiquitin ligase complex, which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. The SCF complex plays a crucial role in regulating response to auxin and is essential for growth and development. Through the RING-type zinc finger, seems to recruit the E2 ubiquitination enzyme, to the complex and brings it into close proximity to the substrate (By similarity); Belongs to the RING-box family (115 aa)
     
      0.543
AT1G20110
RING/FYVE/PHD zinc finger superfamily protein; Endosomal sorting complex required for transport (ESCRT) component regulating multivesicular body (MVB) protein sorting and plant growth. Required for the formation of intra-luminal vesicles (ILVs)in MVBs. Binds to phosphatidylinositol-3-phosphate (PI3P) and ubiquitin. Controls IRT1 recycling to the plasma membrane and impacts the polar delivery of this transporter to the outer plasma membrane domain. Regulates ubiquitin-dependent membrane protein degradation, vacuolar transport, autophagy, and vacuole biogenesis (601 aa)
       
 
  0.539
AT2G45730
Eukaryotic initiation factor 3 gamma subunit family protein; Its function is described as translation initiation factor activity; Involved in translational initiation, regulation of translational initiation; Located in cellular_component unknown; Expressed in 24 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- Eukaryotic initiation factor 3, gamma subunit (InterPro-IPR007316), tRNA (adenine-N(1)-)-methyltransferase, non-catalytic TRM6 subunit (InterPro-IPR017423); Has 402 Blast hits to 378 proteins in 203 species- Archae - 0; Bacteria - 4; M [...] (446 aa)
           
  0.529
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
Server load: low (10%) [HD]