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STRINGSTRING
AT1G14680 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G14680" - Early endosome antigen in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G14680Early endosome antigen; Unknown protein; BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT4G09060.1); Has 8132 Blast hits to 6366 proteins in 685 species- Archae - 171; Bacteria - 671; Metazoa - 4046; Fungi - 445; Plants - 318; Viruses - 23; Other Eukaryotes - 2458 (source- NCBI BLink) (290 aa)    
Predicted Functional Partners:
AT1G09320
Agenet domain-containing protein; Its function is described as RNA binding; Involved in biological_process unknown; Located in chloroplast; Expressed in 24 plant structures; Expressed during 15 growth stages; Contains the following InterPro domains- Tudor-like, plant (InterPro-IPR014002), Agenet (InterPro-IPR008395); BEST Arabidopsis thaliana protein match is- agenet domain-containing protein (TAIR-AT3G06520.1); Has 769 Blast hits to 316 proteins in 28 species- Archae - 0; Bacteria - 0; Metazoa - 13; Fungi - 3; Plants - 733; Viruses - 0; Other Eukaryotes - 20 (source- NCBI BLink) (517 aa)
     
        0.402
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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