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AT1G15010 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G15010" - Mediator of RNA polymerase II transcription subunit in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
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Textmining
[Homology]
Score
AT1G15010Mediator of RNA polymerase II transcription subunit; Unknown protein; BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT2G01300.1); Has 71 Blast hits to 71 proteins in 13 species- Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 69; Viruses - 0; Other Eukaryotes - 0 (source- NCBI BLink) (142 aa)    
Predicted Functional Partners:
AT4G29780
Uncharacterized protein At4g29780; Unknown protein; BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT5G12010.1); Has 945 Blast hits to 944 proteins in 87 species- Archae - 0; Bacteria - 0; Metazoa - 519; Fungi - 43; Plants - 365; Viruses - 0; Other Eukaryotes - 18 (source- NCBI BLink) (540 aa)
     
        0.426
AT2G22880
Uncharacterized protein At2g22880; VQ motif-containing protein; Its function is described as molecular_function unknown; Involved in biological_process unknown; Located in chloroplast; Expressed in 8 plant structures; Expressed during LP.06 six leaves visible, LP.04 four leaves visible, LP.10 ten leaves visible, LP.08 eight leaves visible, LP.12 twelve leaves visible; Contains the following InterPro domains- VQ (InterPro-IPR008889); BEST Arabidopsis thaliana protein match is- VQ motif-containing protein (TAIR-AT4G37710.1); Has 33 Blast hits to 33 proteins in 8 species- Archae - 0; Bact [...] (114 aa)
     
        0.412
AT2G27080
Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family; Required for plant immunity against the bacterial pathogen Pseudomonas syringae pv. tomato DC3000 (Pst DC3000) (260 aa)
     
        0.408
CML38
Calcium-binding protein CML38; Potential calcium sensor that binds calcium in vitro (177 aa)
     
        0.405
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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