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AT1G15280 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G15280" - CASC3/Barentsz eIF4AIII binding in Arabidopsis thaliana
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G15280CASC3/Barentsz eIF4AIII binding (585 aa)    
Predicted Functional Partners:
PYM
Partner of Y14-MAGO (204 aa)
           
  0.987
Y14
RNA-binding protein 8A (202 aa)
     
 
  0.938
AT1G28260
Telomerase activating protein Est1; May play a role in growth and development (880 aa)
           
  0.922
MAGO
MAGO NASHI (150 aa)
       
 
  0.846
EIF4A-III
Eukaryotic initiation factor 4A-III; ATP-dependent RNA helicase involved in 40S ribosomal subunit biogenesis. Required for the processing and cleavage of 35S pre-rRNA at sites A0, A1, and A2, leading to mature 18S rRNA (By similarity) (408 aa)
           
  0.737
ALY2
ALWAYS EARLY 2 (1052 aa)
     
      0.619
LDA
Limit dextrinase; Involved in starch degradation and also probably in the trimming of pre-amylopectin chains during starch synthesis (965 aa)
           
  0.559
AT4G12670
DNA binding protein (499 aa)
     
        0.435
SUA
Suppressor of abi3-5; Splicing factor that controls alternative splicing of the developmental regulator ABI3. Reduces splicing of a cryptic intron in ABI3, leading to a decreased in ABI3-beta transcript (PubMed-20525852). Regulates the splicing of the receptor-like kinase SNC4/LRKL-2.6 (PubMed-25267732) (1008 aa)
     
        0.435
PRP40B
pre-mRNA-processing protein 40B; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. I [...] (992 aa)
     
        0.428
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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